.gitignore
.readthedocs.yaml
.travis.yml
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/ISSUE_TEMPLATE/informal-request.md
.github/workflows/build-macos.yml
.github/workflows/build-ubuntu.yml
.github/workflows/build-windows.yml
FijiMacros/multiple_files.ijm
FijiMacros/single_file.ijm
UserManual/Cell-ACDC_User_Manual.pdf
UserManual/placeholder.txt
cellacdc/__init__.py
cellacdc/__main__.py
cellacdc/_version.py
cellacdc/apps.py
cellacdc/cca_functions.py
cellacdc/code_structure.md
cellacdc/config.py
cellacdc/core.py
cellacdc/dataPrep.py
cellacdc/dataStruct.py
cellacdc/data_handler.py
cellacdc/gui.py
cellacdc/html_utils.py
cellacdc/load.py
cellacdc/measurements.py
cellacdc/myutils.py
cellacdc/prompts.py
cellacdc/qrc_resources.py
cellacdc/resources.qrc
cellacdc/segm.py
cellacdc/test_new_model.py
cellacdc/widgets.py
cellacdc/workers.py
cellacdc.egg-info/PKG-INFO
cellacdc.egg-info/SOURCES.txt
cellacdc.egg-info/dependency_links.txt
cellacdc.egg-info/entry_points.txt
cellacdc.egg-info/requires.txt
cellacdc.egg-info/top_level.txt
cellacdc/bioformats/__init__.py
cellacdc/bioformats/formatreader.py
cellacdc/bioformats/formatwriter.py
cellacdc/bioformats/log4j.py
cellacdc/bioformats/metadatatools.py
cellacdc/bioformats/noseplugin.py
cellacdc/bioformats/omexml.py
cellacdc/bioformats/jars/bioformats_package.jar
cellacdc/bioformats/tests/locate_jars.py
cellacdc/help/__init__.py
cellacdc/help/about.py
cellacdc/help/welcome.py
cellacdc/metrics/CV.py
cellacdc/models/__init__.py
cellacdc/models/StarDist/__init__.py
cellacdc/models/StarDist/acdcSegment.py
cellacdc/models/YeaZ/__init__.py
cellacdc/models/YeaZ/acdcSegment.py
cellacdc/models/YeaZ/test1.tif
cellacdc/models/YeaZ/unet/LaunchBatchPrediction.py
cellacdc/models/YeaZ/unet/__init__.py
cellacdc/models/YeaZ/unet/hungarian.py
cellacdc/models/YeaZ/unet/model.py
cellacdc/models/YeaZ/unet/neural_network.py
cellacdc/models/YeaZ/unet/segment.py
cellacdc/models/YeaZ/unet/tracking.py
cellacdc/models/YeastMate/__init__.py
cellacdc/models/YeastMate/acdcSegment.py
cellacdc/models/cellpose/__init__.py
cellacdc/models/cellpose/acdcSegment.py
cellacdc/resources/Logo_Helmholtz.png
cellacdc/resources/figures/Fig1.jpg
cellacdc/resources/figures/Fig1.png
cellacdc/resources/figures/Table1.jpg
cellacdc/resources/fonts/ArialMT-Bold.otf
cellacdc/resources/fonts/ArialMT-BoldItalic.otf
cellacdc/resources/fonts/ArialMT-Italic.otf
cellacdc/resources/fonts/ArialMT-Regular.ttf
cellacdc/resources/fonts/Calibri-Bold.ttf
cellacdc/resources/fonts/Calibri-BoldItalic.ttf
cellacdc/resources/fonts/Calibri-Italic.ttf
cellacdc/resources/fonts/Calibri-Regular.ttf
cellacdc/resources/fonts/Ubuntu-Bold.ttf
cellacdc/resources/fonts/Ubuntu-BoldItalic.ttf
cellacdc/resources/fonts/Ubuntu-Italic.ttf
cellacdc/resources/fonts/Ubuntu-Light.ttf
cellacdc/resources/fonts/Ubuntu-LightItalic.ttf
cellacdc/resources/fonts/Ubuntu-Medium.ttf
cellacdc/resources/fonts/Ubuntu-MediumItalic.ttf
cellacdc/resources/fonts/Ubuntu-Regular.ttf
cellacdc/resources/fonts/Ubuntu.ttf
cellacdc/resources/icons/LICENSE.txt
cellacdc/resources/icons/addCustomDelRoi.svg
cellacdc/resources/icons/addDelRoi.svg
cellacdc/resources/icons/annotate.svg
cellacdc/resources/icons/applyCrop.svg
cellacdc/resources/icons/arrow-down.svg
cellacdc/resources/icons/arrow-left.svg
cellacdc/resources/icons/arrow-right.svg
cellacdc/resources/icons/arrow-up.svg
cellacdc/resources/icons/assign-motherbud.svg
cellacdc/resources/icons/autoAssign.svg
cellacdc/resources/icons/bin.svg
cellacdc/resources/icons/bkgrRoi.svg
cellacdc/resources/icons/book.svg
cellacdc/resources/icons/brush-cursor.png
cellacdc/resources/icons/brush.svg
cellacdc/resources/icons/cancel.svg
cellacdc/resources/icons/cancelButton.svg
cellacdc/resources/icons/cog.svg
cellacdc/resources/icons/collapse.svg
cellacdc/resources/icons/continue.svg
cellacdc/resources/icons/contribute.svg
cellacdc/resources/icons/crop.svg
cellacdc/resources/icons/cropZ.svg
cellacdc/resources/icons/curv_cursor.svg
cellacdc/resources/icons/curvature-tool.svg
cellacdc/resources/icons/delBorderObj.svg
cellacdc/resources/icons/download.svg
cellacdc/resources/icons/drawer.svg
cellacdc/resources/icons/edit-copy.svg
cellacdc/resources/icons/edit-cut.svg
cellacdc/resources/icons/edit-id.svg
cellacdc/resources/icons/edit-paste.svg
cellacdc/resources/icons/eraser.png
cellacdc/resources/icons/exit.png
cellacdc/resources/icons/expand.svg
cellacdc/resources/icons/expandLabel.svg
cellacdc/resources/icons/eye-plus.svg
cellacdc/resources/icons/eye.svg
cellacdc/resources/icons/file-exit.svg
cellacdc/resources/icons/file-new.svg
cellacdc/resources/icons/file-open.svg
cellacdc/resources/icons/file-save.svg
cellacdc/resources/icons/fill_holes.svg
cellacdc/resources/icons/find.svg
cellacdc/resources/icons/folder-open.svg
cellacdc/resources/icons/folder-upload.svg
cellacdc/resources/icons/help-content.svg
cellacdc/resources/icons/hideUp.svg
cellacdc/resources/icons/history.svg
cellacdc/resources/icons/home.svg
cellacdc/resources/icons/hull.svg
cellacdc/resources/icons/image.svg
cellacdc/resources/icons/info.svg
cellacdc/resources/icons/interp.svg
cellacdc/resources/icons/magic_wand.svg
cellacdc/resources/icons/merge-IDs.svg
cellacdc/resources/icons/moveLabel.svg
cellacdc/resources/icons/no.svg
cellacdc/resources/icons/okButton.svg
cellacdc/resources/icons/overlay.svg
cellacdc/resources/icons/prep.svg
cellacdc/resources/icons/quickStart.svg
cellacdc/resources/icons/redo.svg
cellacdc/resources/icons/reinitCca.svg
cellacdc/resources/icons/reload.svg
cellacdc/resources/icons/repeat-tracking.svg
cellacdc/resources/icons/repeatAssign-motherbud.svg
cellacdc/resources/icons/rip.svg
cellacdc/resources/icons/ruler.svg
cellacdc/resources/icons/segment.svg
cellacdc/resources/icons/separate-bud.svg
cellacdc/resources/icons/showDown.svg
cellacdc/resources/icons/start.svg
cellacdc/resources/icons/undo.svg
cellacdc/resources/icons/wand_cursor.svg
cellacdc/resources/icons/warning.svg
cellacdc/resources/icons/wizard.svg
cellacdc/resources/icons/yesGray.svg
cellacdc/resources/icons/zback.svg
cellacdc/resources/icons/zforw.svg
cellacdc/resources/icons/math/add.svg
cellacdc/resources/icons/math/backspace.svg
cellacdc/resources/icons/math/calc.svg
cellacdc/resources/icons/math/clear.svg
cellacdc/resources/icons/math/close_bracket.svg
cellacdc/resources/icons/math/divide.svg
cellacdc/resources/icons/math/ln.svg
cellacdc/resources/icons/math/log10.svg
cellacdc/resources/icons/math/multiply.svg
cellacdc/resources/icons/math/open_bracket.svg
cellacdc/resources/icons/math/pow.svg
cellacdc/resources/icons/math/square.svg
cellacdc/resources/icons/math/square_root.svg
cellacdc/resources/icons/math/subtract.svg
cellacdc/resources/screenshots/toolTip.png
cellacdc/resources/screenshots/toolbar.png
cellacdc/resources/screenshots/visual_studio_settings.png
cellacdc/temp/placeholder.txt
cellacdc/trackers/__init__.py
cellacdc/trackers/BayesianTracker/BayesianTracker_tracker.py
cellacdc/trackers/BayesianTracker/__init__.py
cellacdc/trackers/BayesianTracker/model/__init__.py
cellacdc/trackers/BayesianTracker/model/cell_config.json
cellacdc/trackers/CellACDC/CellACDC_tracker.py
cellacdc/trackers/CellACDC/__init__.py
cellacdc/trackers/YeaZ/YeaZ_tracker.py
cellacdc/trackers/YeaZ/__init__.py
cellacdc/trackers/YeaZ/tracking.py
cellacdc/utils/__init__.py
cellacdc/utils/align.py
cellacdc/utils/compute.py
cellacdc/utils/concat.py
cellacdc/utils/convert.py
cellacdc/utils/rename.py
cellacdc/utils/screenRecorder.py
data/placeholder.txt
docs/Makefile
docs/make.bat
docs/source/conf.py
docs/source/getting-started.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/images/logo.svg
notebooks/acdc_paper_plots.ipynb
notebooks/cell_cycle_analysis.ipynb
tests/test_import_cellacdc.py