CHANGELOG.md
LICENSE.md
MANIFEST.in
README.md
setup.cfg
setup.py
poreplex/__init__.py
poreplex/__main__.py
poreplex/alignment_writer.py
poreplex/barcoding.py
poreplex/basecall_albacore.py
poreplex/commandline.py
poreplex/dashboard.py
poreplex/io.py
poreplex/keras_wrap.py
poreplex/pipeline.py
poreplex/polya.py
poreplex/signal_analyzer.py
poreplex/signal_loader.py
poreplex/utils.py
poreplex/worker_persistence.py
poreplex.egg-info/PKG-INFO
poreplex.egg-info/SOURCES.txt
poreplex.egg-info/dependency_links.txt
poreplex.egg-info/entry_points.txt
poreplex.egg-info/requires.txt
poreplex.egg-info/top_level.txt
poreplex/kmer_models/COPYRIGHT
poreplex/kmer_models/LICENSE.md
poreplex/kmer_models/README.md
poreplex/kmer_models/r9.4_180mv_70bps_5mer_RNA/template_median69pA.model
poreplex/kmer_models/r9.4_200mv_70bps_5mer_RNA/template_median68pA.model
poreplex/presets/rna-r941.cfg
poreplex/presets/MIN106-RNA001/demux-tetra-r3.hdf5
poreplex/presets/MIN106-RNA001/scaler-r3.hdf5
src/csupport.c
src/contrib/scrappie/LICENSE.md
src/contrib/scrappie/event_detection.c
src/contrib/scrappie/event_detection.h
src/contrib/scrappie/scrappie-patches.diff
src/contrib/scrappie/scrappie_stdlib.h
src/contrib/scrappie/scrappie_structures.h
training/barcodes/Snakefile
training/barcodes/config.yaml
training/barcodes/refs/controls.fa.gz
training/barcodes/refs/curated-blacklist.txt
training/barcodes/scripts/generate_fast5_catalog.py
training/barcodes/scripts/generate_random_adapter_signals.py
training/barcodes/scripts/prepare_training_data.py
training/barcodes/scripts/train_demux_nn.py
training/barcodes/workflows/prepare_references.py
training/barcodes/workflows/preprocessing.py
training/barcodes/workflows/sequence_alignments.py
training/barcodes/workflows/training_data_preparation.py
training/signal-scaling/Snakefile
training/signal-scaling/scripts/add-model-attributes.py
training/signal-scaling/scripts/extract-signals.py
training/signal-scaling/scripts/learn-scaling.py