.gitattributes
.gitignore
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
style_guide.md
examples/fileio/convert_kul_ct_recon_to_dicom.py
examples/fileio/convert_kul_nifti_to_dicom.py
examples/fileio/ct_dcm_tags_to_copy.txt
examples/fileio/dcm_tags_to_copy.txt
examples/fileio/ibsi_read_rtstruct_test.py
examples/fileio/interpolate_rtdose.py
examples/fileio/labelvolume_to_rtstruct.py
examples/fileio/pixel_segmentation_to_contour.py
examples/fileio/read_dcm_overlay.py
examples/fileio/read_dcm_rt_struct.py
examples/fileio/rt_struct_to_nifti.py
examples/fileio/rtdose_tags_to_copy.txt
examples/fileio/view_nrrd_seg.py
examples/fileio/voxel_segmentation_to_surface_mesh.py
examples/image_operations/volume_warp.py
examples/keras_mnist_segmentation/.gitignore
examples/keras_mnist_segmentation/README.md
examples/keras_mnist_segmentation/callbacks.py
examples/keras_mnist_segmentation/compare_dice.py
examples/keras_mnist_segmentation/create_data.py
examples/keras_mnist_segmentation/evaluate_mnist_model.py
examples/keras_mnist_segmentation/mnist_class.py
examples/keras_mnist_segmentation/mnist_generator.py
examples/keras_mnist_segmentation/mnist_seg_with_generator.py
examples/keras_mnist_segmentation/slow_generator.py
examples/keras_mnist_segmentation/unet.py
examples/registration/rigid_registration.py
examples/viewer/read_pet_ct_dicom_and_display.py
pymirc/__init__.py
pymirc.egg-info/PKG-INFO
pymirc.egg-info/SOURCES.txt
pymirc.egg-info/dependency_links.txt
pymirc.egg-info/requires.txt
pymirc.egg-info/top_level.txt
pymirc/fileio/__init__.py
pymirc/fileio/labelvol_to_rtstruct.py
pymirc/fileio/radioPharmaceuticalInfoSequence.py
pymirc/fileio/read_dicom.py
pymirc/fileio/read_rtstruct.py
pymirc/fileio/write_dicom.py
pymirc/image_operations/__init__.py
pymirc/image_operations/aff_transform.py
pymirc/image_operations/backward_3d_warp.py
pymirc/image_operations/binary_2d_image_to_contours.py
pymirc/image_operations/forward_3d_warp.py
pymirc/image_operations/grad.py
pymirc/image_operations/mincostpath.py
pymirc/image_operations/random_deformation_field.py
pymirc/image_operations/reorient.py
pymirc/image_operations/resample_cont_cont.py
pymirc/image_operations/resample_img_cont.py
pymirc/image_operations/rigid_registration.py
pymirc/image_operations/zoom3d.py
pymirc/metrics/__init__.py
pymirc/metrics/cost_functions.py
pymirc/metrics/tf_losses.py
pymirc/metrics/tf_metrics.py
pymirc/viewer/__init__.py
pymirc/viewer/threeaxisviewer.py
tutorial/challenge.ipynb
tutorial/data/demo/T1maps.png
tutorial/data/demo/example_contours.png
tutorial/data/demo/example_groundtruth.png
tutorial/data/demo/short-axis.png
tutorial/utils/evaluation.py
tutorial/utils/losses.py
tutorial/utils/metrics.py