LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
CellProfiler.egg-info/PKG-INFO
CellProfiler.egg-info/SOURCES.txt
CellProfiler.egg-info/dependency_links.txt
CellProfiler.egg-info/entry_points.txt
CellProfiler.egg-info/requires.txt
CellProfiler.egg-info/top_level.txt
cellprofiler/__init__.py
cellprofiler/__main__.py
cellprofiler/knime_bridge.py
cellprofiler/misc.py
cellprofiler/data/.DS_Store
cellprofiler/data/examples/.DS_Store
cellprofiler/data/examples/ExampleFly/.DS_Store
cellprofiler/data/examples/ExampleFly/ExampleFly.cppipe
cellprofiler/data/examples/ExampleFly/images/01_POS002_D.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS002_F.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS002_R.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS076_D.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS076_F.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS076_R.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS218_D.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS218_F.TIF
cellprofiler/data/examples/ExampleFly/images/01_POS218_R.TIF
cellprofiler/data/help/display_image_tools.rst
cellprofiler/data/help/display_interactive_navigation.rst
cellprofiler/data/help/display_menu_bar.rst
cellprofiler/data/help/legacy_matlab_image.rst
cellprofiler/data/help/navigation_edit_menu.rst
cellprofiler/data/help/navigation_file_menu.rst
cellprofiler/data/help/navigation_test_menu.rst
cellprofiler/data/help/navigation_window_menu.rst
cellprofiler/data/help/other_3d_identify.rst
cellprofiler/data/help/other_batch.rst
cellprofiler/data/help/other_logging.rst
cellprofiler/data/help/other_omero.rst
cellprofiler/data/help/other_plugins.rst
cellprofiler/data/help/other_troubleshooting.rst
cellprofiler/data/help/output_measurements.rst
cellprofiler/data/help/output_plateviewer.rst
cellprofiler/data/help/output_spreadsheets.rst
cellprofiler/data/help/pipelines_building.rst
cellprofiler/data/help/pipelines_running.rst
cellprofiler/data/help/projects_configure_images.rst
cellprofiler/data/help/projects_image_sequences.rst
cellprofiler/data/help/projects_introduction.rst
cellprofiler/data/help/projects_selecting_images.rst
cellprofiler/data/help/why_use_cellprofiler.rst
cellprofiler/data/icons/CellProfiler-favicon-120.png
cellprofiler/data/icons/CellProfiler-favicon-128.png
cellprofiler/data/icons/CellProfiler-favicon-144.png
cellprofiler/data/icons/CellProfiler-favicon-152.png
cellprofiler/data/icons/CellProfiler-favicon-195.png
cellprofiler/data/icons/CellProfiler-favicon-228.png
cellprofiler/data/icons/CellProfiler-favicon-32.png
cellprofiler/data/icons/CellProfiler-favicon-57.png
cellprofiler/data/icons/CellProfiler-favicon-72.png
cellprofiler/data/icons/CellProfiler-favicon-96.png
cellprofiler/data/icons/CellProfiler-favicon.ico
cellprofiler/data/icons/CellProfiler.ai
cellprofiler/data/icons/CellProfiler.icns
cellprofiler/data/icons/CellProfiler.ico
cellprofiler/data/icons/CellProfiler.png
cellprofiler/data/icons/CellProfiler.svg
cellprofiler/data/images/Align.png
cellprofiler/data/images/ApplyThreshold.png
cellprofiler/data/images/CollapseTree.png
cellprofiler/data/images/ColorToGray.png
cellprofiler/data/images/CorrectIlluminationApply.png
cellprofiler/data/images/CorrectIlluminationCalculate.png
cellprofiler/data/images/Crop.png
cellprofiler/data/images/ExpandOrShrinkObjects.png
cellprofiler/data/images/ExpandTree.png
cellprofiler/data/images/GrayToColor.png
cellprofiler/data/images/Groups_ExampleDisplayTable.png
cellprofiler/data/images/IMG_ANALYZED.png
cellprofiler/data/images/IMG_ANALYZE_16.png
cellprofiler/data/images/IMG_ANALYZE_24.png
cellprofiler/data/images/IMG_CLOSED_EYE.png
cellprofiler/data/images/IMG_DISABLED.png
cellprofiler/data/images/IMG_ERROR.png
cellprofiler/data/images/IMG_EYE.png
cellprofiler/data/images/IMG_GO.png
cellprofiler/data/images/IMG_GO_DIM.png
cellprofiler/data/images/IMG_IMAGE.png
cellprofiler/data/images/IMG_MEASURE.png
cellprofiler/data/images/IMG_OK.png
cellprofiler/data/images/IMG_PAUSE.png
cellprofiler/data/images/IMG_RUN.png
cellprofiler/data/images/IMG_SLIDER.png
cellprofiler/data/images/IMG_SLIDER_ACTIVE.png
cellprofiler/data/images/IMG_STOP.png
cellprofiler/data/images/IMG_TEST.png
cellprofiler/data/images/IMG_UNAVAILABLE.png
cellprofiler/data/images/IMG_USE_INPUT.png
cellprofiler/data/images/IMG_USE_OUTPUT.png
cellprofiler/data/images/IMG_USE_SOURCE.png
cellprofiler/data/images/IMG_WARN.png
cellprofiler/data/images/IdentifyPrimaryObjects_IntensityDeclumping.png
cellprofiler/data/images/IdentifyPrimaryObjects_ShapeDeclumping.png
cellprofiler/data/images/IdentifySecondaryObjects.png
cellprofiler/data/images/IdentifyTertiaryObjects.png
cellprofiler/data/images/Images_FilelistPanel.png
cellprofiler/data/images/Images_FilelistPanel_Blank.png
cellprofiler/data/images/Images_FilelistPanel_Filled.png
cellprofiler/data/images/Images_UsingRules.png
cellprofiler/data/images/MeasureGranularity_example.png
cellprofiler/data/images/MeasureImageAreaOccupied.png
cellprofiler/data/images/MeasureObjectIntensityDistribution_Edges_Centers.png
cellprofiler/data/images/MeasureObjectIntensityDistribution_Magnitude_Phase.png
cellprofiler/data/images/MeasureObjectSizeShape_Eccentricity.png
cellprofiler/data/images/MeasureTexture.png
cellprofiler/data/images/Metadata_ExampleDisplayTable.png
cellprofiler/data/images/NamesAndTypes_ExampleDisplayTable.png
cellprofiler/data/images/Tile.png
cellprofiler/data/images/UnmixColors.png
cellprofiler/data/images/check.png
cellprofiler/data/images/color.png
cellprofiler/data/images/cp_panel_schematic.png
cellprofiler/data/images/dapi.png
cellprofiler/data/images/delete.png
cellprofiler/data/images/downarrow.png
cellprofiler/data/images/eye-close.png
cellprofiler/data/images/eye-open.png
cellprofiler/data/images/ffwd.png
cellprofiler/data/images/ffwddisabled.png
cellprofiler/data/images/filter.png
cellprofiler/data/images/folder_browse.png
cellprofiler/data/images/folder_create.png
cellprofiler/data/images/gear.png
cellprofiler/data/images/gfp.png
cellprofiler/data/images/icon_copyrights.txt
cellprofiler/data/images/illumination_function.png
cellprofiler/data/images/image_to_object_dataflow.png
cellprofiler/data/images/image_to_object_dataflow.psd
cellprofiler/data/images/mask.png
cellprofiler/data/images/microscope-color_16.png
cellprofiler/data/images/microscope-icon_16.png
cellprofiler/data/images/microscope-icon_32.png
cellprofiler/data/images/microscopes_16.png
cellprofiler/data/images/module_add.png
cellprofiler/data/images/module_help.png
cellprofiler/data/images/module_movedown.png
cellprofiler/data/images/module_moveup.png
cellprofiler/data/images/module_remove.png
cellprofiler/data/images/monochrome.png
cellprofiler/data/images/movie_16.png
cellprofiler/data/images/next.png
cellprofiler/data/images/objects.png
cellprofiler/data/images/pause.png
cellprofiler/data/images/pausedisabled.png
cellprofiler/data/images/play.png
cellprofiler/data/images/playdisabled.png
cellprofiler/data/images/previous.png
cellprofiler/data/images/remove-sign.png
cellprofiler/data/images/rewind.png
cellprofiler/data/images/rewinddisabled.png
cellprofiler/data/images/splash.png
cellprofiler/data/images/status_pause.png
cellprofiler/data/images/status_save.png
cellprofiler/data/images/status_stop.png
cellprofiler/data/images/stop.png
cellprofiler/data/images/stopdisabled.png
cellprofiler/data/images/structuringelement.png
cellprofiler/data/images/thumb-down.png
cellprofiler/data/images/thumb-up.png
cellprofiler/data/images/unchecked.png
cellprofiler/data/images/wantpony.wav
cellprofiler/data/images/welcome_examples.png
cellprofiler/data/images/welcome_forum.png
cellprofiler/data/images/welcome_help.png
cellprofiler/data/images/welcome_manual.png
cellprofiler/data/images/welcome_new.png
cellprofiler/data/images/welcome_pipeline.png
cellprofiler/data/images/welcome_screen_help.png
cellprofiler/data/images/welcome_start.png
cellprofiler/data/images/welcome_tutorial.png
cellprofiler/data/images/welcomescreen_forum.png
cellprofiler/data/images/welcomescreen_manual.png
cellprofiler/data/images/welcomescreen_tutorials.png
cellprofiler/data/images/window_back.png
cellprofiler/data/images/window_filesave.png
cellprofiler/data/images/window_forward.png
cellprofiler/data/images/window_home.png
cellprofiler/data/images/window_pan.png
cellprofiler/data/images/window_zoom_to_rect.png
cellprofiler/gui/__init__.py
cellprofiler/gui/_tree_checkbox_dialog.py
cellprofiler/gui/_welcome_frame.py
cellprofiler/gui/_workspace_model.py
cellprofiler/gui/addmoduleframe.py
cellprofiler/gui/app.py
cellprofiler/gui/artist.py
cellprofiler/gui/checkupdate.py
cellprofiler/gui/cornerbuttonmixin.py
cellprofiler/gui/cpframe.py
cellprofiler/gui/dialog.py
cellprofiler/gui/editobjectsdlg.py
cellprofiler/gui/errordialog.py
cellprofiler/gui/htmldialog.py
cellprofiler/gui/imagesetctrl.py
cellprofiler/gui/menu.py
cellprofiler/gui/metadatactrl.py
cellprofiler/gui/moduleview.py
cellprofiler/gui/namesubscriber.py
cellprofiler/gui/omerologin.py
cellprofiler/gui/parametersampleframe.py
cellprofiler/gui/pathlist.py
cellprofiler/gui/pipeline.py
cellprofiler/gui/pipelinecontroller.py
cellprofiler/gui/pipelinelistview.py
cellprofiler/gui/plateviewer.py
cellprofiler/gui/regexp_editor.py
cellprofiler/gui/tools.py
cellprofiler/gui/constants/__init__.py
cellprofiler/gui/constants/figure.py
cellprofiler/gui/constants/module_view.py
cellprofiler/gui/constants/preferences_dialog.py
cellprofiler/gui/constants/preferences_view.py
cellprofiler/gui/constants/workspace_view.py
cellprofiler/gui/figure/__init__.py
cellprofiler/gui/figure/_figure.py
cellprofiler/gui/figure/_navigation_toolbar.py
cellprofiler/gui/figure/_outline_artist.py
cellprofiler/gui/help/__init__.py
cellprofiler/gui/help/content.py
cellprofiler/gui/help/menu.py
cellprofiler/gui/help/search.py
cellprofiler/gui/html/__init__.py
cellprofiler/gui/html/htmlwindow.py
cellprofiler/gui/html/utils.py
cellprofiler/gui/module_view/__init__.py
cellprofiler/gui/module_view/_binary_matrix_controller.py
cellprofiler/gui/module_view/_data_type_controller.py
cellprofiler/gui/module_view/_file_collection_display_controller.py
cellprofiler/gui/module_view/_filter_panel_controller.py
cellprofiler/gui/module_view/_joiner_controller.py
cellprofiler/gui/module_view/_module_sizer.py
cellprofiler/gui/module_view/_module_view.py
cellprofiler/gui/module_view/_setting_edited_event.py
cellprofiler/gui/module_view/_table_controller.py
cellprofiler/gui/module_view/_validation_request_controller.py
cellprofiler/gui/preferences_dialog/__init__.py
cellprofiler/gui/preferences_dialog/_integer_preference.py
cellprofiler/gui/preferences_dialog/_preferences_dialog.py
cellprofiler/gui/preferences_view/__init__.py
cellprofiler/gui/preferences_view/_preferences_view.py
cellprofiler/gui/preferences_view/_progress_watcher.py
cellprofiler/gui/utilities/__init__.py
cellprofiler/gui/utilities/figure.py
cellprofiler/gui/utilities/icon.py
cellprofiler/gui/utilities/module_view.py
cellprofiler/gui/utilities/preferences_dialog.py
cellprofiler/gui/utilities/preferences_view.py
cellprofiler/gui/utilities/workspace_view.py
cellprofiler/gui/workspace_view/__init__.py
cellprofiler/gui/workspace_view/_workspace_view.py
cellprofiler/gui/workspace_view/_workspace_view_figure.py
cellprofiler/gui/workspace_view/_workspace_view_image_row.py
cellprofiler/gui/workspace_view/_workspace_view_mask_row.py
cellprofiler/gui/workspace_view/_workspace_view_measurement_row.py
cellprofiler/gui/workspace_view/_workspace_view_objects_row.py
cellprofiler/gui/workspace_view/_workspace_view_row.py
cellprofiler/icons/__init__.py
cellprofiler/modules/__init__.py
cellprofiler/modules/_help.py
cellprofiler/modules/calculatemath.py
cellprofiler/modules/calculatestatistics.py
cellprofiler/modules/classifyobjects.py
cellprofiler/modules/closing.py
cellprofiler/modules/colortogray.py
cellprofiler/modules/combineobjects.py
cellprofiler/modules/convertimagetoobjects.py
cellprofiler/modules/convertobjectstoimage.py
cellprofiler/modules/correctilluminationapply.py
cellprofiler/modules/correctilluminationcalculate.py
cellprofiler/modules/createbatchfiles.py
cellprofiler/modules/crop.py
cellprofiler/modules/definegrid.py
cellprofiler/modules/dilateimage.py
cellprofiler/modules/dilateobjects.py
cellprofiler/modules/displaydataonimage.py
cellprofiler/modules/displaydensityplot.py
cellprofiler/modules/displayhistogram.py
cellprofiler/modules/displayplatemap.py
cellprofiler/modules/displayscatterplot.py
cellprofiler/modules/editobjectsmanually.py
cellprofiler/modules/enhanceedges.py
cellprofiler/modules/enhanceorsuppressfeatures.py
cellprofiler/modules/erodeimage.py
cellprofiler/modules/erodeobjects.py
cellprofiler/modules/expandorshrinkobjects.py
cellprofiler/modules/exporttodatabase.py
cellprofiler/modules/exporttospreadsheet.py
cellprofiler/modules/fillobjects.py
cellprofiler/modules/filterobjects.py
cellprofiler/modules/flagimage.py
cellprofiler/modules/flipandrotate.py
cellprofiler/modules/gaussianfilter.py
cellprofiler/modules/graytocolor.py
cellprofiler/modules/identifydeadworms.py
cellprofiler/modules/identifyobjectsingrid.py
cellprofiler/modules/identifyobjectsmanually.py
cellprofiler/modules/identifyprimaryobjects.py
cellprofiler/modules/identifysecondaryobjects.py
cellprofiler/modules/identifytertiaryobjects.py
cellprofiler/modules/imagemath.py
cellprofiler/modules/invertforprinting.py
cellprofiler/modules/labelimages.py
cellprofiler/modules/makeprojection.py
cellprofiler/modules/maskimage.py
cellprofiler/modules/maskobjects.py
cellprofiler/modules/matchtemplate.py
cellprofiler/modules/measurecolocalization.py
cellprofiler/modules/measuregranularity.py
cellprofiler/modules/measureimageareaoccupied.py
cellprofiler/modules/measureimageintensity.py
cellprofiler/modules/measureimageoverlap.py
cellprofiler/modules/measureimagequality.py
cellprofiler/modules/measureimageskeleton.py
cellprofiler/modules/measureobjectintensity.py
cellprofiler/modules/measureobjectintensitydistribution.py
cellprofiler/modules/measureobjectneighbors.py
cellprofiler/modules/measureobjectoverlap.py
cellprofiler/modules/measureobjectsizeshape.py
cellprofiler/modules/measureobjectskeleton.py
cellprofiler/modules/measuretexture.py
cellprofiler/modules/medialaxis.py
cellprofiler/modules/medianfilter.py
cellprofiler/modules/morph.py
cellprofiler/modules/morphologicalskeleton.py
cellprofiler/modules/opening.py
cellprofiler/modules/overlayobjects.py
cellprofiler/modules/overlayoutlines.py
cellprofiler/modules/reducenoise.py
cellprofiler/modules/relateobjects.py
cellprofiler/modules/removeholes.py
cellprofiler/modules/rescaleintensity.py
cellprofiler/modules/resize.py
cellprofiler/modules/resizeobjects.py
cellprofiler/modules/runimagejmacro.py
cellprofiler/modules/savecroppedobjects.py
cellprofiler/modules/saveimages.py
cellprofiler/modules/shrinktoobjectcenters.py
cellprofiler/modules/smooth.py
cellprofiler/modules/splitormergeobjects.py
cellprofiler/modules/straightenworms.py
cellprofiler/modules/threshold.py
cellprofiler/modules/tile.py
cellprofiler/modules/trackobjects.py
cellprofiler/modules/unmixcolors.py
cellprofiler/modules/untangleworms.py
cellprofiler/modules/watershed.py
cellprofiler/modules/plugins/__init__.py
cellprofiler/modules/plugins/imagetemplate.py
cellprofiler/modules/plugins/measurementtemplate.py
cellprofiler/utilities/__init__.py
cellprofiler/utilities/morphology.py
cellprofiler/utilities/rules.py