#!/usr/bin/env python3.7

# Author: Roujia Li
# email: Roujia.li@mail.utoronto.ca

import argparse

from TileSeqMut.posterior_qc import PosteriorQC

parser = argparse.ArgumentParser(description='TileSeq mutation posterior QC, this will generate posterior_QC folder '
                                             'in *_mut_count')
# user input arguments
parser.add_argument("-i", "--input", help="Path to folder that contains mutation counts (*_mut_count)", type=str,
                    required=True)
parser.add_argument("-p", "--param", help="json paramter file", type=str, required=True)

args = parser.parse_args()

p_qc = PosteriorQC(args.input, args.param)
p_qc.runQC()

