.gitignore
.gitlab-ci.yml
LICENSE
MANIFEST.in
README.MITOS
README.md
analyse.py
authors.txt
environment.yaml
gcpp.py
geneorder.py
getfeatures.py
getinfo.py
refseqsplit.py
requirements.txt
runmitos.py
setup.cfg
setup.py
subseq.py
taxtree.py
data/modelle-v1/12smito-1.0.cm
data/modelle-v1/16smito-1.0.cm
data/modelle-v1/Metazoa_A-1.0.cm
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data/modelle-v1/Metazoa_I-1.0.cm
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mitos/CONFIG.py
mitos/CONFIG.py.sample
mitos/__init__.py
mitos/booreparser.py
mitos/convert_tree.py
mitos/create_prot_fasta.py
mitos/inihit.py
mitos/mitoch_revisions.py
mitos/mitoloc.py
mitos/mitos-extension.py
mitos/mitos-extension2.py
mitos/ogre-geneorder.py
mitos/plotprot.R
mitos/plotrna.R
mitos/prepareFiles.py
mitos/removegene.py
mitos/skew.py
mitos/trna-cm.py
mitos/trnadist.py
mitos/update-blastdb.py
mitos/update-mitolog.py
mitos.egg-info/PKG-INFO
mitos.egg-info/SOURCES.txt
mitos.egg-info/dependency_links.txt
mitos.egg-info/requires.txt
mitos.egg-info/top_level.txt
mitos/bedfile/__init__.py
mitos/blast/__init__.py
mitos/codon/__init__.py
mitos/codons/gc.prt
mitos/draw/__init__.py
mitos/extprog/__init__.py
mitos/feature/__init__.py
mitos/gb/__init__.py
mitos/gb/unify.py
mitos/gfffile/__init__.py
mitos/mergefeature/__init__.py
mitos/mitfi/__init__.py
mitos/mitfi/parser/improve_infernal_structure.jar
mitos/mitfi/parser/mitfiGeneticCodes
mitos/mitfi/parser/mitfi_import-1.1.jar
mitos/mitfi/parser/mitfi_import.jar
mitos/mito/__init__.py
mitos/mitofile/__init__.py
mitos/rna/__init__.py
mitos/rna/forester.py
mitos/rna/vienna.py
mitos/sequence/__init__.py
mitos/sequence/degenerate.py
mitos/tax/__init__.py
mitos/tbl/__init__.py
mitos/trna/__init__.py
mitos/trna/arwenscan.py
mitos/trna/trnascan.py
mitos/update/__init__.py
mitos/webserver/DB_index.txt
mitos/webserver/DB_search.txt
mitos/webserver/__init__.py
mitos/webserver/help.txt
mitos/webserver/history.txt
mitos/webserver/index.txt
mitos/webserver/news.txt
mitos/webserver/upload.txt
mitos/webserver/wait.txt
test/MITOS-alphabet.fas
test/MITOS-empty.fas
test/MITOS-multi.fas
test/MITOS-nofasta.fas
test/MITOS-to-large.fas
test/NC_012920.fasta
test/README
web/mitos/.htaccess
web/mitos/NC_012453.fasta
web/mitos/NC_012453.gff2
web/mitos/apple-touch-icon-precomposed.png
web/mitos/example.log
web/mitos/favicon.ico
web/mitos/favicon.png
web/mitos/favicon.svg
web/mitos/icon-114.png
web/mitos/icon-144.png
web/mitos/icon-57.png
web/mitos/icon-72.png
web/mitos/index.html
web/mitos/index.py
web/mitos/robots.txt
web/mitos/example/result
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web/mitos/example/blast/blast.dat
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web/mitos/example/blast/prot/sequence.atp8.blast
web/mitos/example/blast/prot/sequence.atp9.blast
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web/mitos/example/blast/prot/sequence.nad2.blast
web/mitos/example/blast/prot/sequence.nad3.blast
web/mitos/example/blast/prot/sequence.nad4.blast
web/mitos/example/blast/prot/sequence.nad4l.blast
web/mitos/example/blast/prot/sequence.nad5.blast
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web/mitos/example/mitfi-global/tRNAout.nc
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