Metadata-Version: 1.0
Name: bio2bel-reactome
Version: 0.0.4
Summary: A wrapper around Reactome RESTful API
Home-page: https://github.com/bio2bel/reactome
Author: Daniel Domingo-Fernández and Charles Tapley Hoyt
Author-email: daniel.domingo.fernandez@scai.fraunhofer.de
License: MIT License
Description-Content-Type: UNKNOWN
Description: Bio2BEL Reactome |build| |coverage| |docs|
        ==========================================
        This package allows the enrichment of BEL networks with Reactome information by wrapping its RESTful API.
        Furthermore, it is integrated in the `ComPath environment <https://github.com/ComPath>`_ for pathway database comparison.
        
        Installation
        ------------
        This code can be installed with :code:`pip3 install git+https://github.com/bio2bel/reactome.git`
        
        Note that the two following resources should be installed and loaded in order to fully populate the tables of the database:
        
        - `Bio2BEL CHEBI <https://github.com/bio2bel/chebi>`_
        - `Bio2BEL HGNC <https://github.com/bio2bel/hgnc>`_
        
        These two resources will be installed together with this package and can be quickly loaded by running the following commands in your terminal:
        
        - :code:`python3 -m bio2bel_hgnc populate`
        - :code:`python3 -m bio2bel_chebi populate`
        
        Functionalities and Commands
        ----------------------------
        Following, the main functionalities and commands to work with this package:
        
        - Populate local database with Reactome info :code:`python3 -m bio2bel_reactome populate`
        - Run an admin site for simple querying and exploration :code:`python3 -m bio2bel_reactome web` (http://localhost:5000/admin/)
        - Export gene sets for programmatic use :code:`python3 -m bio2bel_reactome export`
        
        Citation
        --------
        - Fabregat, Antonio et al. “The Reactome Pathway Knowledgebase.” Nucleic Acids Research 44.Database issue (2016): D481–D487. PMC. Web. 6 Oct. 2017.
        - Croft, David et al. “The Reactome Pathway Knowledgebase.” Nucleic Acids Research 42.Database issue (2014): D472–D477. PMC. Web. 6 Oct. 2017.
        
        .. |build| image:: https://travis-ci.org/bio2bel/reactome.svg?branch=master
            :target: https://travis-ci.org/bio2bel/reactome
            :alt: Build Status
        
        .. |coverage| image:: https://codecov.io/gh/bio2bel/reactome/coverage.svg?branch=master
            :target: https://codecov.io/gh/bio2bel/reactome?branch=master
            :alt: Coverage Status
        
        .. |docs| image:: http://readthedocs.org/projects/bio2bel-reactome/badge/?version=latest
            :target: http://bio2bel.readthedocs.io/projects/reactome/en/latest/?badge=latest
            :alt: Documentation Status
        
Platform: UNKNOWN
