.codecov.yml
.flake8
.readthedocs.yml
.travis.yml
AUTHORS.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/source/cli.rst
docs/source/conf.py
docs/source/constants.rst
docs/source/index.rst
docs/source/kegg.rst
docs/source/reactome.rst
docs/source/utils.rst
docs/source/wikipathways.rst
src/pathme/__init__.py
src/pathme/__main__.py
src/pathme/cli.py
src/pathme/constants.py
src/pathme/export_utils.py
src/pathme/mappings_parser.py
src/pathme/normalize_names.py
src/pathme/pybel_utils.py
src/pathme/utils.py
src/pathme.egg-info/PKG-INFO
src/pathme.egg-info/SOURCES.txt
src/pathme.egg-info/dependency_links.txt
src/pathme.egg-info/entry_points.txt
src/pathme.egg-info/not-zip-safe
src/pathme.egg-info/requires.txt
src/pathme.egg-info/top_level.txt
src/pathme/kegg/__init__.py
src/pathme/kegg/__main__.py
src/pathme/kegg/cli.py
src/pathme/kegg/convert_to_bel.py
src/pathme/kegg/kegg_xml_parser.py
src/pathme/kegg/utils.py
src/pathme/reactome/__init__.py
src/pathme/reactome/__main__.py
src/pathme/reactome/cli.py
src/pathme/reactome/convert_to_bel.py
src/pathme/reactome/rdf_sparql.py
src/pathme/reactome/utils.py
src/pathme/wikipathways/__init__.py
src/pathme/wikipathways/__main__.py
src/pathme/wikipathways/cli.py
src/pathme/wikipathways/convert_to_bel.py
src/pathme/wikipathways/json_rdf_parser.py
src/pathme/wikipathways/rdf_sparql.py
src/pathme/wikipathways/utils.py
tests/__init__.py
tests/constants.py
tests/resources/chebi_test.tsv.gz
tests/resources/hgnc_test.json
tests/resources/kegg/03320_cpd_test.xml
tests/resources/kegg/hsa00010.xml
tests/resources/kegg/hsa04150_pmod_test.xml
tests/resources/kegg/hsa04330.xml
tests/resources/wp/WP107.ttl
tests/resources/wp/WP111.ttl
tests/resources/wp/WP1871.ttl
tests/resources/wp/WP22.ttl
tests/resources/wp/WP22.ttl.pickle
tests/resources/wp/WP2359_mod.ttl
tests/resources/wp/WP2359_mod.ttl.pickle
tests/resources/wp/WP2799.ttl
tests/resources/wp/WP706.ttl
tests/test_kegg/__init__.py
tests/test_kegg/test_kegg.py
tests/test_shared/__init__.py
tests/test_shared/test_utils.py
tests/test_wikipathways/__init__.py
tests/test_wikipathways/test_custom_parser_wikipathways.py
tests/test_wikipathways/test_wikipathways.py