README.txt
setup.py
TFEA/__init__.py
TFEA/__main__.py
TFEA/annotate_motifs.py
TFEA/bedgraph_intersect.py
TFEA/combine.py
TFEA/config.py
TFEA/enrichment.py
TFEA/exceptions.py
TFEA/main.py
TFEA/main.sbatch
TFEA/multiprocess.py
TFEA/mumerge.py
TFEA/mumerge_test_unit.py
TFEA/output.py
TFEA/plot.py
TFEA/process_inputs.py
TFEA/rank.py
TFEA/scanner.py
TFEA/simulate/__init__.py
TFEA/simulate/__main__.py
TFEA/simulate/main.py
TFEA/simulate/motif_insert.py
TFEA/simulate/pull_sequences.py
TFEA/simulate/simulate.sbatch
TFEA/test/__init__.py
TFEA/test/test.sbatch
TFEA/test/test_full.py
TFEA/test/test_install.py
TFEA/test/test_simulate.py
TFEA/test/test_files/Allen2014_simulated_10.fa
TFEA/test/test_files/SRR1105736.sorted.chr22.subsample.bam
TFEA/test/test_files/SRR1105736.sorted.chr22.subsample.bam.bai
TFEA/test/test_files/SRR1105736.tfit_bidirs.chr22.bed
TFEA/test/test_files/SRR1105737.sorted.chr22.subsample.bam
TFEA/test/test_files/SRR1105737.sorted.chr22.subsample.bam.bai
TFEA/test/test_files/SRR1105737.tfit_bidirs.chr22.bed
TFEA/test/test_files/SRR1105738.sorted.chr22.subsample.bam
TFEA/test/test_files/SRR1105738.sorted.chr22.subsample.bam.bai
TFEA/test/test_files/SRR1105738.tfit_bidirs.chr22.bed
TFEA/test/test_files/SRR1105739.sorted.chr22.subsample.bam
TFEA/test/test_files/SRR1105739.sorted.chr22.subsample.bam.bai
TFEA/test/test_files/SRR1105739.tfit_bidirs.chr22.bed
TFEA/test/test_files/chr22.fa
TFEA/test/test_files/chr22.fa.fai
TFEA/test/test_files/count_file.header.bed
TFEA/test/test_files/deseq_test.R
TFEA/test/test_files/test_combined_file.bed
TFEA/test/test_files/test_config.ini
TFEA/test/test_files/test_database.meme
TFEA/test/test_files/test_database2.meme
TFEA/test/test_files/test_fasta_file.fa
TFEA/test/test_files/test_motif_annotation.bed
TFEA/test/test_files/test_ranked_file.bed
bin/TFEA
bin/TFEA-annotate
bin/TFEA-simulate
tfea.egg-info/PKG-INFO
tfea.egg-info/SOURCES.txt
tfea.egg-info/dependency_links.txt
tfea.egg-info/not-zip-safe
tfea.egg-info/requires.txt
tfea.egg-info/top_level.txt