.bazelversion
.gitattributes
.gitignore
BUILD
LICENSE
MANIFEST.in
Makefile
README.md
WORKSPACE
bazelisk.py
pyproject.toml
pytest.ini
requirements.txt
setup.py
shell.nix
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/bazel_build_linux.yml
.github/workflows/bazel_build_windows.yml
.github/workflows/bazel_test_mac.yml
.github/workflows/draft_pdf.yml
bazel/BUILD
bazel/clode_http_archive.bzl
bazel/external_deps.bzl
bazel/get_python_libs.py
bazel/repositories.bzl
bazel/repository_locations.bzl
bazel/repository_locations_utils.bzl
bazel/external/BUILD
bazel/external/fmtlib.BUILD
bazel/external/opencl_windows.BUILD
bazel/external/pybind11.BUILD
bazel/external/python.BUILD
bazel/external/spdlog.BUILD
bazel/python/BUILD
bazel/python/BUILD.tpl
bazel/python/python.bzl
bazel/python/python_native.bzl
bazel/python/variety.tpl
bazel/remote_config/BUILD
bazel/remote_config/common.bzl
clode/BUILD
clode.egg-info/PKG-INFO
clode.egg-info/SOURCES.txt
clode.egg-info/dependency_links.txt
clode.egg-info/top_level.txt
clode/cpp/BUILD
clode/cpp/CLODE.cpp
clode/cpp/CLODE.hpp
clode/cpp/CLODEfeatures.cpp
clode/cpp/CLODEfeatures.hpp
clode/cpp/CLODEpython.cpp
clode/cpp/CLODEtrajectory.cpp
clode/cpp/CLODEtrajectory.hpp
clode/cpp/OpenCLResource.cpp
clode/cpp/OpenCLResource.hpp
clode/cpp/__init__.py
clode/cpp/clODE_random.cl
clode/cpp/clODE_struct_defs.cl
clode/cpp/clODE_utilities.cl
clode/cpp/features.cl
clode/cpp/initializeObserver.cl
clode/cpp/observers.cl
clode/cpp/odedriver.cl
clode/cpp/realtype.cl
clode/cpp/steppers.cl
clode/cpp/trajectory.cl
clode/cpp/transient.cl
clode/cpp/OpenCL/BUILD
clode/cpp/OpenCL/cl.hpp
clode/cpp/OpenCL/cl2.hpp
clode/cpp/logging/BUILD
clode/cpp/logging/MatlabSink.hpp
clode/cpp/logging/PythonSink.hpp
clode/cpp/observers/BUILD
clode/cpp/observers/observer_basic.clh
clode/cpp/observers/observer_basic_allVar.clh
clode/cpp/observers/observer_local_maximum.clh
clode/cpp/observers/observer_neighborhood_1.clh
clode/cpp/observers/observer_neighborhood_2.clh
clode/cpp/observers/observer_template.clh
clode/cpp/observers/observer_threshold_1.clh
clode/cpp/observers/observer_threshold_2.clh
clode/cpp/steppers/BUILD
clode/cpp/steppers/adaptive_bs23.clh
clode/cpp/steppers/adaptive_dp45.clh
clode/cpp/steppers/adaptive_explicit_step.clh
clode/cpp/steppers/adaptive_he12.clh
clode/cpp/steppers/adaptive_rkck.clh
clode/cpp/steppers/fixed_explicit_Euler.clh
clode/cpp/steppers/fixed_explicit_RK4.clh
clode/cpp/steppers/fixed_explicit_Trapezoidal.clh
clode/cpp/steppers/fixed_explicit_step.clh
clode/cpp/steppers/fixed_explicit_stochastic_Euler.clh
clode/python/BUILD
clode/python/__init__.py
clode/python/features.py
clode/python/observer.py
clode/python/problem_info.py
clode/python/runtime.py
clode/python/solver_params.py
clode/python/stepper.py
clode/python/trajectory.py
docs/getting_started.md
docs/install.md
docs/matlab.md
matlab/BUILD
matlab/Chart.m
matlab/GridSimulation.m
matlab/InitialValueProblem.m
matlab/README.md
matlab/clODE.m
matlab/clODEfeatures.m
matlab/clODEfeaturesmex.cpp
matlab/clODEmex.cpp
matlab/clODEmexHelpers.hpp
matlab/clODEtrajectory.m
matlab/clODEtrajectorymex.cpp
matlab/clickTrajectory.m
matlab/compileCLODEmex.m
matlab/cppclass.m
matlab/functionSignatures.json
matlab/generate_pointset.m
matlab/gridKeyPress.m
matlab/gridfigure.m
matlab/gridtool.m
matlab/gridtool_old.m
matlab/plot_twopar.m
matlab/queryOpenCL.cpp
matlab/trajectoryfigure.m
paper/paper.bib
paper/paper.md
samples/BUILD
samples/Makefile
samples/lacto_more_vars.cl
samples/lactotroph.cl
samples/lactotroph.ode
samples/lactotroph_noise.cl
samples/lactotroph_noise.ode
samples/listOpenCL.cpp
samples/plot_twopar.m
samples/run_twopar.m
samples/test.cl
samples/testCLODE.m
samples/testCLODEfeatures.m
samples/testCLODEmex.m
samples/testCLODEtrajectory.m
samples/testFeatures.cpp
samples/testFeatures_morevars.cpp
samples/testTrajectory.cpp
samples/testTransient.cpp
samples/test_outputs_cpp.md
samples/windowsCompileListOpenCL.txt
test/BUILD
test/__init__.py
test/ornl_thompson_a1.cl
test/test.cl
test/test_lactotroph.py
test/test_lactotroph_more_vars.py
test/test_lactotroph_trajectory.py
test/test_ornl_thompson_a1.py
test/test_pituitary.py
test/test_vdp.py
test/test_vdp_long.py
test/van_der_pol_oscillator.cl