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py:module
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	ase.eos                                  ase/eos.html#module-ase.eos
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	ase.optimize.basin                       ase/optimize.html#module-ase.optimize.basin
	ase.optimize.precon                      ase/optimize.html#module-ase.optimize.precon
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	ase.phonons                              ase/phonons.html#module-ase.phonons
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	ase.visualize.nglview                    ase/visualize/visualize.html#module-ase.visualize.nglview
py:property
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std:doc
	about                                    About                                   : about.html
	ase/ase                                  Modules                                 : ase/ase.html
	ase/atom                                 The Atom object                         : ase/atom.html
	ase/atoms                                The Atoms object                        : ase/atoms.html
	ase/build/build                          Building things                         : ase/build/build.html
	ase/build/connected                      Separation of structures                : ase/build/connected.html
	ase/build/surface                        Surfaces                                : ase/build/surface.html
	ase/build/tools                          Tools for building things               : ase/build/tools.html
	ase/calculators/FHI-aims                 FHI-aims                                : ase/calculators/FHI-aims.html
	ase/calculators/abinit                   ABINIT                                  : ase/calculators/abinit.html
	ase/calculators/ace                      ACE-Molecule                            : ase/calculators/ace.html
	ase/calculators/amber                    Amber                                   : ase/calculators/amber.html
	ase/calculators/calculators              Calculators                             : ase/calculators/calculators.html
	ase/calculators/castep                   CASTEP                                  : ase/calculators/castep.html
	ase/calculators/checkpointing            Checkpointing                           : ase/calculators/checkpointing.html
	ase/calculators/cp2k                     CP2K                                    : ase/calculators/cp2k.html
	ase/calculators/crystal                  CRYSTAL14                               : ase/calculators/crystal.html
	ase/calculators/demon                    Demon                                   : ase/calculators/demon.html
	ase/calculators/demonnano                deMon-Nano                              : ase/calculators/demonnano.html
	ase/calculators/dftb                     DFTB+                                   : ase/calculators/dftb.html
	ase/calculators/dftd3                    DFT-D3                                  : ase/calculators/dftd3.html
	ase/calculators/dmol                     DMol3                                   : ase/calculators/dmol.html
	ase/calculators/eam                      EAM                                     : ase/calculators/eam.html
	ase/calculators/emt                      Pure Python EMT calculator              : ase/calculators/emt.html
	ase/calculators/espresso                 Espresso                                : ase/calculators/espresso.html
	ase/calculators/exciting                 exciting                                : ase/calculators/exciting.html
	ase/calculators/fleur                    FLEUR                                   : ase/calculators/fleur.html
	ase/calculators/gamess_us                GAMESS-US                               : ase/calculators/gamess_us.html
	ase/calculators/gaussian                 Gaussian                                : ase/calculators/gaussian.html
	ase/calculators/gromacs                  Gromacs                                 : ase/calculators/gromacs.html
	ase/calculators/gulp                     GULP                                    : ase/calculators/gulp.html
	ase/calculators/harmonic                 Harmonic calculator                     : ase/calculators/harmonic.html
	ase/calculators/jacapo                   Jacapo - ASE python interface for Dacapo: ase/calculators/jacapo.html
	ase/calculators/kim                      KIM                                     : ase/calculators/kim.html
	ase/calculators/lammps                   LAMMPS Calculators                      : ase/calculators/lammps.html
	ase/calculators/lammpsrun                LAMMPSrun                               : ase/calculators/lammpsrun.html
	ase/calculators/loggingcalc              Logging Calculator                      : ase/calculators/loggingcalc.html
	ase/calculators/mixing                   Mixing Calculators                      : ase/calculators/mixing.html
	ase/calculators/mopac                    Mopac                                   : ase/calculators/mopac.html
	ase/calculators/nwchem                   NWChem                                  : ase/calculators/nwchem.html
	ase/calculators/octopus                  Octopus                                 : ase/calculators/octopus.html
	ase/calculators/onetep                   ONETEP                                  : ase/calculators/onetep.html
	ase/calculators/openmx                   OpenMX                                  : ase/calculators/openmx.html
	ase/calculators/orca                     ORCA                                    : ase/calculators/orca.html
	ase/calculators/others                   Other built-in calculators              : ase/calculators/others.html
	ase/calculators/plumed                   PLUMED                                  : ase/calculators/plumed.html
	ase/calculators/psi4                     psi4                                    : ase/calculators/psi4.html
	ase/calculators/qchem                    Q-Chem                                  : ase/calculators/qchem.html
	ase/calculators/qmmm                     QMMM                                    : ase/calculators/qmmm.html
	ase/calculators/siesta                   SIESTA                                  : ase/calculators/siesta.html
	ase/calculators/socketio/socketio        Communication with calculators over sockets: ase/calculators/socketio/socketio.html
	ase/calculators/test                     Stuff for testing things                : ase/calculators/test.html
	ase/calculators/turbomole                TURBOMOLE                               : ase/calculators/turbomole.html
	ase/calculators/vasp                     VASP                                    : ase/calculators/vasp.html
	ase/cell                                 The Cell object                         : ase/cell.html
	ase/cluster/cluster                      Nanoparticles and clusters              : ase/cluster/cluster.html
	ase/collections                          Collections                             : ase/collections.html
	ase/constraints                          Constraints                             : ase/constraints.html
	ase/data                                 The data module                         : ase/data.html
	ase/db/db                                A database for atoms                    : ase/db/db.html
	ase/dft/bader                            Bader Analysis                          : ase/dft/bader.html
	ase/dft/bandgap                          Band gap                                : ase/dft/bandgap.html
	ase/dft/bztable                          Brillouin zone data                     : ase/dft/bztable.html
	ase/dft/dft                              Density Functional Theory               : ase/dft/dft.html
	ase/dft/dos                              Density of states                       : ase/dft/dos.html
	ase/dft/kpoints                          Brillouin zone sampling                 : ase/dft/kpoints.html
	ase/dft/stm                              STM images                              : ase/dft/stm.html
	ase/dft/wannier                          Maximally localized Wannier functions   : ase/dft/wannier.html
	ase/dimer                                Dimer method                            : ase/dimer.html
	ase/eos                                  Equation of state                       : ase/eos.html
	ase/formula                              Chemical formula type                   : ase/formula.html
	ase/ga/ga                                Genetic Algorithm                       : ase/ga/ga.html
	ase/geometry                             Geometry tools                          : ase/geometry.html
	ase/gui/basics                           ase-gui basics and command line options : ase/gui/basics.html
	ase/gui/calculate                        Calculate                               : ase/gui/calculate.html
	ase/gui/edit                             Edit                                    : ase/gui/edit.html
	ase/gui/gui                              ASE�s GUI                               : ase/gui/gui.html
	ase/gui/setup                            Setup                                   : ase/gui/setup.html
	ase/gui/tools                            Tools                                   : ase/gui/tools.html
	ase/gui/view                             View                                    : ase/gui/view.html
	ase/io/formatoptions                     Format Specific Options                 : ase/io/formatoptions.html
	ase/io/io                                File input and output                   : ase/io/io.html
	ase/io/opls                              Setting up an OPLS force field calculation: ase/io/opls.html
	ase/io/trajectory                        Trajectory files                        : ase/io/trajectory.html
	ase/io/ulm                               ULM files                               : ase/io/ulm.html
	ase/lattice                              Bravais lattices                        : ase/lattice.html
	ase/legacy                               Legacy functionality                    : ase/legacy.html
	ase/md                                   Molecular dynamics                      : ase/md.html
	ase/neb                                  Nudged elastic band                     : ase/neb.html
	ase/neighborlist                         Building neighbor-lists                 : ase/neighborlist.html
	ase/optimize                             Structure optimization                  : ase/optimize.html
	ase/parallel                             Parallel calculations                   : ase/parallel.html
	ase/phasediagram/phasediagram            Phase diagrams and Pourbaix diagrams    : ase/phasediagram/phasediagram.html
	ase/phonons                              Phonon calculations                     : ase/phonons.html
	ase/spacegroup/spacegroup                Using the spacegroup subpackage         : ase/spacegroup/spacegroup.html
	ase/spectrum/doscollection               Density of states collections           : ase/spectrum/doscollection.html
	ase/spectrum/dosdata                     Density of states data                  : ase/spectrum/dosdata.html
	ase/spectrum/spectrum                    Spectrum tools                          : ase/spectrum/spectrum.html
	ase/symbols                              Chemical symbols                        : ase/symbols.html
	ase/thermochemistry/thermochemistry      Thermochemistry                         : ase/thermochemistry/thermochemistry.html
	ase/transport/transport                  Electron transport                      : ase/transport/transport.html
	ase/units                                Units                                   : ase/units.html
	ase/utils                                Utillity functions and classes          : ase/utils.html
	ase/vibrations/franck_condon             Evaluation of Franck-Condon factors     : ase/vibrations/franck_condon.html
	ase/vibrations/infrared                  Infrared intensities                    : ase/vibrations/infrared.html
	ase/vibrations/modes                     Vibrational modes                       : ase/vibrations/modes.html
	ase/vibrations/raman                     Resonant and non-resonant Raman spectra : ase/vibrations/raman.html
	ase/vibrations/vibrations                Vibration analysis                      : ase/vibrations/vibrations.html
	ase/visualize/visualize                  Visualization                           : ase/visualize/visualize.html
	ase/xrdebye                              X-ray scattering simulation             : ase/xrdebye.html
	cmdline                                  Command line tool                       : cmdline.html
	contact                                  Contact                                 : contact.html
	development/bugs                         Bugs!                                   : development/bugs.html
	development/calculators                  Adding new calculators                  : development/calculators.html
	development/contribute                   How to contribute                       : development/contribute.html
	development/development                  Development                             : development/development.html
	development/licenseinfo                  License                                 : development/licenseinfo.html
	development/making_movies                Making movies                           : development/making_movies.html
	development/newrelease                   New release                             : development/newrelease.html
	development/proposals/calculators        Calculator interface proposal           : development/proposals/calculators.html
	development/proposals/labels             Labels for atoms                        : development/proposals/labels.html
	development/proposals/proposals          ASE enhancement proposals               : development/proposals/proposals.html
	development/python_codingstandard        Coding Conventions                      : development/python_codingstandard.html
	development/tests                        Testing the code                        : development/tests.html
	development/translate                    Translate ASE                           : development/translate.html
	development/writing_documentation_ase    Writing documentation                   : development/writing_documentation_ase.html
	ecosystem                                ASE ecosystem                           : ecosystem.html
	faq                                      Frequently Asked Questions              : faq.html
	gallery/gallery                          Gallery                                 : gallery/gallery.html
	gettingstarted/cluster/cluster           Nanoparticle                            : gettingstarted/cluster/cluster.html
	gettingstarted/external_calculators/ext_intro External calculators                    : gettingstarted/external_calculators/ext_intro.html
	gettingstarted/gettingstarted            Getting started                         : gettingstarted/gettingstarted.html
	gettingstarted/manipulating_atoms/manipulating_atoms Manipulating atoms                      : gettingstarted/manipulating_atoms/manipulating_atoms.html
	gettingstarted/surface                   Introduction: Nitrogen on copper        : gettingstarted/surface.html
	gettingstarted/tut01_molecule/molecule   Atoms and calculators                   : gettingstarted/tut01_molecule/molecule.html
	gettingstarted/tut02_h2o_structure/h2o   Structure optimization: H2O             : gettingstarted/tut02_h2o_structure/h2o.html
	gettingstarted/tut04_bulk/bulk           Crystals and band structure             : gettingstarted/tut04_bulk/bulk.html
	index                                    Atomic Simulation Environment           : index.html
	install                                  Installation                            : install.html
	numpy                                    Numeric arrays in Python                : numpy.html
	python                                   What is Python?                         : python.html
	releasenotes                             Release notes                           : releasenotes.html
	tips                                     Tips and tricks                         : tips.html
	tutorials/acn_equil/acn_equil            Equilibrating an MD box of acetonitrile : tutorials/acn_equil/acn_equil.html
	tutorials/atomization                    Atomization energy                      : tutorials/atomization.html
	tutorials/constraints/diffusion          Surface diffusion energy barriers using ASE constraints: tutorials/constraints/diffusion.html
	tutorials/db/db                          Surface adsorption study using the ASE database: tutorials/db/db.html
	tutorials/defects/defects                Tools for defect calculations           : tutorials/defects/defects.html
	tutorials/deltacodesdft/deltacodesdft    Calculating Delta-values                : tutorials/deltacodesdft/deltacodesdft.html
	tutorials/dimensionality/dimensionality  Dimensionality analysis                 : tutorials/dimensionality/dimensionality.html
	tutorials/dissociation                   Dissociation of a molecule using the NEB method: tutorials/dissociation.html
	tutorials/eos/eos                        Equation of state (EOS)                 : tutorials/eos/eos.html
	tutorials/ga/ga_bulk                     Genetic algorithm search for bulk crystal structures: tutorials/ga/ga_bulk.html
	tutorials/ga/ga_convex_hull              Determination of convex hull with a genetic algorithm: tutorials/ga/ga_convex_hull.html
	tutorials/ga/ga_fcc_alloys               Genetic algorithm Search for stable FCC alloys: tutorials/ga/ga_fcc_alloys.html
	tutorials/ga/ga_molecular_crystal        Genetic algorithm search for molecular crystal structures: tutorials/ga/ga_molecular_crystal.html
	tutorials/ga/ga_optimize                 Optimization with a Genetic Algorithm   : tutorials/ga/ga_optimize.html
	tutorials/lattice_constant               Finding lattice constants using EOS and the stress tensor: tutorials/lattice_constant.html
	tutorials/md/md                          Molecular dynamics                      : tutorials/md/md.html
	tutorials/minimahopping/minimahopping    Constrained minima hopping (global optimization): tutorials/minimahopping/minimahopping.html
	tutorials/neb/diffusion                  Surface diffusion energy barriers using the Nudged Elastic Band  (NEB) method: tutorials/neb/diffusion.html
	tutorials/neb/idpp                       Image Dependent Pair Potential for improved interpolation of NEB initial guess: tutorials/neb/idpp.html
	tutorials/qmmm/qmmm                      ASE for QM/MM Simulations               : tutorials/qmmm/qmmm.html
	tutorials/selfdiffusion/al110            Self-diffusion on the Al(110) surface using the NEB and Dimer method: tutorials/selfdiffusion/al110.html
	tutorials/tipnp_equil/tipnp_equil        Equilibrating a TIPnP Water Box         : tutorials/tipnp_equil/tipnp_equil.html
	tutorials/tut03_vibrations/vibrations    Molecular vibrations                    : tutorials/tut03_vibrations/vibrations.html
	tutorials/tut06_database/database        Introduction to ASE databases           : tutorials/tut06_database/database.html
	tutorials/tutorials                      Tutorials                               : tutorials/tutorials.html
	tutorials/wannier/wannier                Partly occupied Wannier Functions       : tutorials/wannier/wannier.html
	workshop/workshop                        ASE Workshop: Software Development for Atomic Scale Modeling - Chalmers 2019: workshop/workshop.html
std:envvar
	ABINIT_PP_PATH                           ase/calculators/abinit.html#envvar-ABINIT_PP_PATH
	ASE_ABINIT_COMMAND                       ase/calculators/abinit.html#envvar-ASE_ABINIT_COMMAND
	PATH                                     install.html#envvar-PATH
	PYTHONPATH                               install.html#envvar-PYTHONPATH
std:label
	abinit-in                                ase/io/formatoptions.html#abinit-in
	abinit-out                               ase/io/formatoptions.html#abinit-out
	about                                    About                                   : about.html#about
	acemolecule-input                        ase/io/formatoptions.html#acemolecule-input
	acemolecule-out                          ase/io/formatoptions.html#acemolecule-out
	acetonitrile_md_box_equilibration        Equilibrating an MD box of acetonitrile : tutorials/acn_equil/acn_equil.html#acetonitrile-md-box-equilibration
	adding new calculators                   Adding new calculators                  : development/calculators.html#adding-new-calculators
	aep1                                     Calculator interface proposal           : development/proposals/calculators.html#aep1
	aims                                     ase/io/formatoptions.html#aims
	aims-output                              ase/io/formatoptions.html#aims-output
	alfe                                     ase/phonons.html#alfe
	alvarez13                                ase/data.html#alvarez13
	ase                                      Modules                                 : ase/ase.html#ase
	ase-db                                   ase db                                  : ase/db/db.html#ase-db
	ase-db-web                               Browse database with your web-browser   : ase/db/db.html#ase-db-web
	ase-gui                                  ASE�s GUI                               : ase/gui/gui.html#ase-gui
	atommanip                                Manipulating atoms                      : gettingstarted/manipulating_atoms/manipulating_atoms.html#atommanip
	atoms_special_attributes                 Special attributes                      : ase/atoms.html#atoms-special-attributes
	attaching-section                        Attaching structures                    : ase/build/build.html#attaching-section
	autopep8py                               Run autopep8.py on your code            : development/python_codingstandard.html#autopep8py
	bash completion                          Bash completion                         : cmdline.html#bash-completion
	bugs                                     Bugs!                                   : development/bugs.html#bugs
	bulk-crystal-section                     Common bulk crystals                    : ase/build/build.html#bulk-crystal-section
	bundletrajectory                         ase/io/formatoptions.html#bundletrajectory
	calculators                              Calculators                             : ase/calculators/calculators.html#calculators
	castep-castep                            ase/io/formatoptions.html#castep-castep
	castep-cell                              ase/io/formatoptions.html#castep-cell
	castep-geom                              ase/io/formatoptions.html#castep-geom
	castep-md                                ase/io/formatoptions.html#castep-md
	castep-phonon                            ase/io/formatoptions.html#castep-phonon
	cfg                                      ase/io/formatoptions.html#cfg
	cif                                      ase/io/formatoptions.html#cif
	cite                                     How should I cite ASE?                  : faq.html#cite
	cli                                      Command line tool                       : cmdline.html#cli
	cmdft                                    ase/io/formatoptions.html#cmdft
	cml                                      ase/io/formatoptions.html#cml
	coding conventions                       Coding Conventions                      : development/python_codingstandard.html#coding-conventions
	constraints diffusion tutorial           Surface diffusion energy barriers using ASE constraints: tutorials/constraints/diffusion.html#constraints-diffusion-tutorial
	contact                                  Contact                                 : contact.html#contact
	contribute                               How to contribute                       : development/contribute.html#contribute
	convert                                  Converting old PickleTrajectory files to new Trajectory files: ase/io/trajectory.html#convert
	cordeo08                                 ase/data.html#cordeo08
	cp2k-dcd                                 ase/io/formatoptions.html#cp2k-dcd
	cp2k-restart                             ase/io/formatoptions.html#cp2k-restart
	crystal                                  ase/io/formatoptions.html#crystal
	cube                                     ase/io/formatoptions.html#cube
	curtiss1997                              ase/collections.html#curtiss1997
	customization                            Customization of the algorithm          : tutorials/ga/ga_convex_hull.html#customization
	dacapo-text                              ase/io/formatoptions.html#dacapo-text
	db                                       ase/io/formatoptions.html#db
	db tutorial                              Surface adsorption study using the ASE database: tutorials/db/db.html#db-tutorial
	dcdft                                    DeltaCodesDFT                           : ase/collections.html#dcdft
	dcdft tut                                Calculating Delta-values                : tutorials/deltacodesdft/deltacodesdft.html#dcdft-tut
	debye1915                                ase/xrdebye.html#debye1915
	defects                                  Tools for defect calculations           : tutorials/defects/defects.html#defects
	devel                                    Development                             : development/development.html#devel
	dftb                                     ase/io/formatoptions.html#dftb
	diffusion tutorial                       Surface diffusion energy barriers using the Nudged Elastic Band  (NEB) method: tutorials/neb/diffusion.html#diffusion-tutorial
	dimtutorial                              Dimensionality analysis                 : tutorials/dimensionality/dimensionality.html#dimtutorial
	dlp-history                              ase/io/formatoptions.html#dlp-history
	dlp4                                     ase/io/formatoptions.html#dlp4
	dmol-arc                                 ase/io/formatoptions.html#dmol-arc
	dmol-car                                 ase/io/formatoptions.html#dmol-car
	dmol-incoor                              ase/io/formatoptions.html#dmol-incoor
	download                                 Installation from source                : install.html#download
	download_and_install                     Installation                            : install.html#download-and-install
	elk                                      ase/io/formatoptions.html#elk
	elk-in                                   ase/io/formatoptions.html#elk-in
	eon                                      ase/io/formatoptions.html#eon
	eos                                      Equation of state (EOS)                 : tutorials/eos/eos.html#eos
	eps                                      ase/io/formatoptions.html#eps
	erhart                                   tutorials/defects/defects.html#erhart
	espresso-in                              ase/io/formatoptions.html#espresso-in
	espresso-out                             ase/io/formatoptions.html#espresso-out
	exciting                                 ase/io/formatoptions.html#exciting
	extxyz                                   ase/io/formatoptions.html#extxyz
	faq                                      Frequently Asked Questions              : faq.html#faq
	fcc_alloys_tutorial                      Genetic algorithm Search for stable FCC alloys: tutorials/ga/ga_fcc_alloys.html#fcc-alloys-tutorial
	findsym                                  ase/io/formatoptions.html#findsym
	fixbondlengths                           The FixBondLengths class                : ase/constraints.html#fixbondlengths
	ga_bulk_tutorial                         Genetic algorithm search for bulk crystal structures: tutorials/ga/ga_bulk.html#ga-bulk-tutorial
	ga_molecular_crystal_tutorial            Genetic algorithm search for molecular crystal structures: tutorials/ga/ga_molecular_crystal.html#ga-molecular-crystal-tutorial
	gamess-us-in                             ase/io/formatoptions.html#gamess-us-in
	gamess-us-out                            ase/io/formatoptions.html#gamess-us-out
	gamess-us-punch                          ase/io/formatoptions.html#gamess-us-punch
	gaussian-in                              ase/io/formatoptions.html#gaussian-in
	gaussian-out                             ase/io/formatoptions.html#gaussian-out
	gen                                      ase/io/formatoptions.html#gen
	general-crystal-section                  General crystal structures and surfaces : ase/lattice.html#general-crystal-section
	general-surface-section                  Create specific non-common surfaces     : ase/build/surface.html#general-surface-section
	generated                                Running Python code to create figures   : development/writing_documentation_ase.html#generated
	genetic_algorithm_optimization_tutorial  Optimization with a Genetic Algorithm   : tutorials/ga/ga_optimize.html#genetic-algorithm-optimization-tutorial
	genindex                                 Index                                   : genindex.html
	gettingstarted                           Getting started                         : gettingstarted/gettingstarted.html#gettingstarted
	gif                                      ase/io/formatoptions.html#gif
	gpaw-out                                 ase/io/formatoptions.html#gpaw-out
	gpumd                                    ase/io/formatoptions.html#gpumd
	gpw                                      ase/io/formatoptions.html#gpw
	grimme                                   ase/calculators/calculators.html#grimme
	gromacs                                  ase/io/formatoptions.html#gromacs
	gromos                                   ase/io/formatoptions.html#gromos
	harmonic                                 Harmonic calculator                     : ase/calculators/harmonic.html#harmonic
	high contrast                            High contrast settings                  : ase/gui/basics.html#high-contrast
	html                                     ase/io/formatoptions.html#html
	idpp_tutorial                            Image Dependent Pair Potential for improved interpolation of NEB initial guess: tutorials/neb/idpp.html#idpp-tutorial
	implementation                           Implementation                          : ase/calculators/kim.html#implementation
	infrared                                 Infrared intensities                    : ase/vibrations/infrared.html#infrared
	iso surface                              Plotting iso-surfaces with Mayavi       : ase/visualize/visualize.html#iso-surface
	iwasa2007                                ase/xrdebye.html#iwasa2007
	jacapo                                   Jacapo - ASE python interface for Dacapo: ase/calculators/jacapo.html#jacapo
	jensen                                   tutorials/ga/ga_fcc_alloys.html#jensen
	johannesson                              tutorials/ga/ga_fcc_alloys.html#johannesson
	json                                     ase/io/formatoptions.html#json
	jsv                                      ase/io/formatoptions.html#jsv
	lammps-data                              ase/io/formatoptions.html#lammps-data
	lammps-dump-binary                       ase/io/formatoptions.html#lammps-dump-binary
	lammps-dump-text                         ase/io/formatoptions.html#lammps-dump-text
	last-minute-corrections                  Adding corrections to be included in a merge request: development/contribute.html#last-minute-corrections
	lattice_constant                         Finding lattice constants using EOS and the stress tensor: tutorials/lattice_constant.html#lattice-constant
	lejaeghere2014                           ase/collections.html#lejaeghere2014
	lejaeghere2016                           ase/collections.html#lejaeghere2016
	license info                             License                                 : development/licenseinfo.html#license-info
	magres                                   ase/io/formatoptions.html#magres
	mail list                                Mailing List                            : contact.html#mail-list
	main script                              Run the algorithm                       : tutorials/ga/ga_fcc_alloys.html#main-script
	making-small-changes                     Making small changes                    : development/contribute.html#making-small-changes
	making_movies_ase                        Making movies                           : development/making_movies.html#making-movies-ase
	matplotlib_plotting                      Matplotlib                              : ase/visualize/visualize.html#matplotlib-plotting
	md_tutorial                              Molecular dynamics                      : tutorials/md/md.html#md-tutorial
	meija2016                                ase/data.html#meija2016
	mep2                                     Dissociation of a molecule using the NEB method: tutorials/dissociation.html#mep2
	metadata                                 Metadata                                : ase/db/db.html#metadata
	mhtutorial                               Constrained minima hopping (global optimization): tutorials/minimahopping/minimahopping.html#mhtutorial
	modindex                                 Module Index                            : py-modindex.html
	mol                                      ase/io/formatoptions.html#mol
	molecular-data                           Molecular data                          : ase/data.html#molecular-data
	monkhorstpack                            ase/dft/kpoints.html#monkhorstpack
	mp4                                      ase/io/formatoptions.html#mp4
	mustem                                   ase/io/formatoptions.html#mustem
	mysql                                    ase/io/formatoptions.html#mysql
	mysql_server                             Running a MySQL server                  : ase/db/db.html#mysql-server
	nacl                                     Sodium chloride                         : ase/spacegroup/spacegroup.html#nacl
	nanoribbons-section                      Graphene nanoribbons                    : ase/build/build.html#nanoribbons-section
	nanotubes-section                        Nanotubes                               : ase/build/build.html#nanotubes-section
	neb2                                     Dissociation of a molecule using the NEB method: tutorials/dissociation.html#neb2
	nebtools                                 Analysis of output                      : ase/neb.html#nebtools
	netcdftrajectory                         ase/io/formatoptions.html#netcdftrajectory
	new trajectory                           The TrajectoryReader and TrajectoryWriter objects: ase/io/trajectory.html#new-trajectory
	newrelease                               New release                             : development/newrelease.html#newrelease
	news                                     News                                    : index.html#news
	nomad-json                               ase/io/formatoptions.html#nomad-json
	numpy                                    Numeric arrays in Python                : numpy.html#numpy
	nwchem-in                                ase/io/formatoptions.html#nwchem-in
	nwchem-out                               ase/io/formatoptions.html#nwchem-out
	octopus-in                               ase/io/formatoptions.html#octopus-in
	old trajectory                           PickleTrajectory                        : ase/io/trajectory.html#old-trajectory
	overview                                 Overview                                : ase/calculators/kim.html#overview
	phase diagrams                           Phase diagrams and Pourbaix diagrams    : ase/phasediagram/phasediagram.html#phase-diagrams
	pip installation                         Installation using pip                  : install.html#pip-installation
	png                                      ase/io/formatoptions.html#png
	postgresql                               ase/io/formatoptions.html#postgresql
	pov                                      ase/io/formatoptions.html#pov
	prismatic                                ase/io/formatoptions.html#prismatic
	proteindatabank                          ase/io/formatoptions.html#proteindatabank
	py                                       ase/io/formatoptions.html#py
	py-modindex                              Python Module Index                     : py-modindex.html
	qbox                                     ase/io/formatoptions.html#qbox
	qmmm                                     ASE for QM/MM Simulations               : tutorials/qmmm/qmmm.html#qmmm
	references                               Setting up reference database           : tutorials/ga/ga_fcc_alloys.html#references
	relaxation script                        tutorials/ga/ga_fcc_alloys.html#relaxation-script
	releasenotes                             Release notes                           : releasenotes.html#releasenotes
	removed_features                         Legacy functionality                    : ase/legacy.html#removed-features
	res                                      ase/io/formatoptions.html#res
	rmc6f                                    ase/io/formatoptions.html#rmc6f
	row objects                              Row objects                             : ase/db/db.html#row-objects
	run the tests                            Test your installation                  : install.html#run-the-tests
	running tests                            Test your installation                  : install.html#running-tests
	s22                                      S22 database of weakly interacting dimers and complexes: ase/collections.html#s22
	sdf                                      ase/io/formatoptions.html#sdf
	search                                   Search Page                             : search.html
	selfdiffusion                            Self-diffusion on the Al(110) surface using the NEB and Dimer method: tutorials/selfdiffusion/al110.html#selfdiffusion
	server                                   Running a PostgreSQL server             : ase/db/db.html#server
	setyawan-curtarolo                       ase/dft/kpoints.html#setyawan-curtarolo
	siesta-xv                                ase/io/formatoptions.html#siesta-xv
	stm                                      STM images                              : ase/dft/stm.html#stm
	struct                                   ase/io/formatoptions.html#struct
	struct_out                               ase/io/formatoptions.html#struct-out
	structure_optimizations                  Structure optimization                  : ase/optimize.html#structure-optimizations
	stylecheck                               Run flake8 on your code                 : development/python_codingstandard.html#stylecheck
	supported calculators                    Supported calculators                   : ase/calculators/calculators.html#supported-calculators
	surface                                  Introduction: Nitrogen on copper        : gettingstarted/surface.html#surface
	surfaces                                 Common surfaces                         : ase/build/surface.html#id1
	symmetry                                 Symmetric duplicate identification      : tutorials/ga/ga_convex_hull.html#symmetry
	sys                                      ase/io/formatoptions.html#sys
	tipnp water box equilibration            Equilibrating a TIPnP Water Box         : tutorials/tipnp_equil/tipnp_equil.html#tipnp-water-box-equilibration
	traj                                     ase/io/formatoptions.html#traj
	translate                                Translate ASE                           : development/translate.html#translate
	turbomole                                ase/io/formatoptions.html#turbomole
	turbomole qmmm                           QMMM simulation                         : ase/calculators/turbomole.html#turbomole-qmmm
	turbomole-gradient                       ase/io/formatoptions.html#turbomole-gradient
	turbomole_optimizer_example              Geometry optimization using TurbomoleOptimizer (recommended): ase/calculators/turbomole.html#turbomole-optimizer-example
	tutorials                                Tutorials                               : tutorials/tutorials.html#tutorials
	using_sphinx                             Using Sphinx                            : development/writing_documentation_ase.html#using-sphinx
	v-sim                                    ase/io/formatoptions.html#v-sim
	vasp                                     ase/io/formatoptions.html#vasp
	vasp-calculator                          VASP                                    : ase/calculators/vasp.html#vasp-calculator
	vasp-out                                 ase/io/formatoptions.html#vasp-out
	vasp-xdatcar                             ase/io/formatoptions.html#vasp-xdatcar
	vasp-xml                                 ase/io/formatoptions.html#vasp-xml
	vti                                      ase/io/formatoptions.html#vti
	vtu                                      ase/io/formatoptions.html#vtu
	waasmaier1995                            ase/xrdebye.html#waasmaier1995
	wang                                     ase/phonons.html#wang
	wannier tutorial                         Partly occupied Wannier Functions       : tutorials/wannier/wannier.html#wannier-tutorial
	what is python                           What is Python?                         : python.html#what-is-python
	wout                                     ase/io/formatoptions.html#wout
	writing-the-commit-message               Writing the commit message              : development/contribute.html#writing-the-commit-message
	writing_documentation_ase                Writing documentation                   : development/writing_documentation_ase.html#writing-documentation-ase
	x3d                                      ase/io/formatoptions.html#x3d
	xsd                                      ase/io/formatoptions.html#xsd
	xsf                                      ase/io/formatoptions.html#xsf
	xtd                                      ase/io/formatoptions.html#xtd
	xyz                                      ase/io/formatoptions.html#xyz
