Metadata-Version: 2.1
Name: pybwtool
Version: 1.0.7
Summary: Python wrapper for the bwtool library.
Home-page: https://github.com/LucaCappelletti94/pybwtool
Author: Luca Cappelletti
Author-email: cappelletti.luca94@gmail.com
License: MIT
Description: pybwtool
        =========================================================================================
        |travis| |sonar_quality| |sonar_maintainability| |codacy|
        |code_climate_maintainability| |pip| |downloads|
        
        Python wrapper for the `bwtool library <https://github.com/CRG-Barcelona/bwtool>`_.
        Please take a look to the `bwtool wiki <https://github.com/CRG-Barcelona/bwtool/wiki#installation>`_ for notes
        on the installation process and to the known issues 
        listed below within this readme.
        
        How do I install this package?
        ----------------------------------------------
        As usual, just download it using pip:
        
        .. code:: shell
        
            pip install pybwtool
        
        Tests Coverage
        ----------------------------------------------
        Since some software handling coverages sometimes get slightly
        different results, here's three of them:
        
        |coveralls| |sonar_coverage| |code_climate_coverage|
        
        Extract
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        The :code:`extract` method returns a tuple of pandas Dataframes
        with the data from the regions of a bed file extracted from the given bigwig.
        
        .. code:: python
        
            from pybwtool import extract
        
            bed, scores = extract(
                bed_path="path/to/my/bed_file.bed",
                bigwig_path="path/to/my/bigwig_file.bigwig"
            )
        
        The obtained dataframes look as follows:
        
        +---------+--------------+------------+
        | chrom   |   chromStart |   chromEnd |
        +=========+==============+============+
        | chr11   |     14606206 |   14606406 |
        +---------+--------------+------------+
        | chr1    |      1336296 |    1336496 |
        +---------+--------------+------------+
        | chr11   |     47745644 |   47745844 |
        +---------+--------------+------------+
        | chr11   |     62609072 |   62609272 |
        +---------+--------------+------------+
        | chr14   |     21523971 |   21524171 |
        +---------+--------------+------------+
        
        +------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+
        |    0 |    1 |    2 |    3 |    4 |    5 |    6 |    7 |    8 |    9 |   10 |   11 |   12 |   13 |   14 |   15 |   16 |   17 |   18 |   19 |   20 |   21 |   22 |   23 |   24 |   25 |   26 |   27 |   28 |   29 |   30 |   31 |   32 |   33 |   34 |   35 |   36 |   37 |   38 |   39 |   40 |   41 |   42 |   43 |   44 |   45 |   46 |   47 |   48 |   49 |   50 |   51 |   52 |   53 |   54 |   55 |   56 |   57 |   58 |   59 |   60 |     61 |     62 |     63 |     64 |     65 |     66 |     67 |     68 |     69 |     70 |     71 |     72 |     73 |     74 |     75 |     76 |     77 |     78 |     79 |     80 |     81 |     82 |     83 |     84 |     85 |   86 |   87 |   88 |   89 |   90 |   91 |   92 |   93 |   94 |   95 |   96 |   97 |   98 |   99 |   100 |   101 |   102 |   103 |   104 |   105 |   106 |   107 |   108 |   109 |   110 |   111 |   112 |   113 |   114 |   115 |   116 |   117 |   118 |   119 |   120 |   121 |   122 |   123 |   124 |   125 |   126 |   127 |   128 |   129 |   130 |   131 |   132 |   133 |   134 |   135 |   136 |   137 |   138 |   139 |   140 |   141 |   142 |   143 |   144 |   145 |   146 |   147 |   148 |   149 |   150 |   151 |   152 |   153 |   154 |   155 |   156 |   157 |   158 |    159 |    160 |    161 |    162 |    163 |    164 |    165 |    166 |    167 |    168 |    169 |    170 |    171 |    172 |    173 |    174 |    175 |    176 |   177 |   178 |   179 |   180 |   181 |   182 |   183 |   184 |   185 |   186 |   187 |   188 |   189 |   190 |   191 |   192 |   193 |   194 |   195 |   196 |   197 |   198 |   199 |
        +======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+======+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+======+======+======+======+======+======+======+======+======+======+======+======+======+======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+========+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+=======+
        | 0.22 | 0.22 | 0.21 | 0.22 | 0.21 | 0.22 | 0.24 | 0.25 | 0.28 | 0.28 | 0.26 | 0.26 | 0.26 | 0.26 | 0.26 | 0.31 | 0.31 | 0.31 | 0.32 | 0.33 | 0.33 | 0.33 | 0.32 | 0.35 | 0.36 | 0.36 | 0.36 | 0.36 | 0.36 | 0.36 | 0.37 | 0.37 | 0.36 | 0.37 | 0.37 | 0.37 | 0.36 | 0.32 | 0.32 | 0.32 | 0.33 | 0.33 | 0.33 | 0.33 | 0.35 | 0.35 | 0.35 | 0.35 | 0.35 | 0.35 | 0.36 | 0.39 | 0.39 | 0.37 | 0.37 | 0.36 | 0.35 | 0.33 | 0.31 | 0.31 | 0.29 |   0.29 |   0.29 |   0.29 |   0.29 |   0.25 |   0.24 |   0.28 |   0.26 |   0.25 |   0.25 |   0.25 |   0.24 |   0.19 |   0.18 |   0.18 |   0.17 |   0.17 |   0.18 |   0.19 |   0.18 |   0.18 |   0.18 |   0.17 |   0.18 |   0.18 | 0.18 | 0.18 | 0.18 | 0.18 | 0.17 | 0.24 | 0.25 | 0.25 | 0.24 | 0.22 | 0.22 | 0.25 | 0.25 | 0.25 |  0.24 |  0.21 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.24 |  0.24 |  0.24 |  0.26 |  0.26 |  0.26 |  0.26 |  0.26 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.21 |  0.21 |  0.21 |  0.19 |  0.19 |  0.19 |  0.22 |  0.22 |  0.22 |  0.22 |  0.24 |  0.25 |  0.25 |  0.26 |  0.26 |  0.26 |  0.19 |  0.18 |  0.18 |  0.18 |  0.18 |  0.18 |  0.15 |  0.15 |  0.15 |  0.15 |  0.15 |  0.17 |  0.17 |  0.17 |  0.17 |  0.17 |  0.17 |  0.18 |   0.17 |   0.17 |   0.17 |   0.14 |   0.14 |   0.14 |   0.14 |   0.14 |   0.14 |   0.14 |   0.14 |   0.14 |   0.17 |   0.17 |   0.17 |   0.17 |   0.17 |   0.18 |  0.18 |  0.18 |  0.18 |  0.18 |  0.15 |  0.15 |  0.15 |  0.14 |  0.12 |  0.11 |  0.12 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |  0.11 |
        +------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+
        | 1.25 | 1.26 | 1.32 | 1.43 | 1.42 | 1.36 | 1.36 | 1.37 | 1.37 | 1.32 | 1.31 | 1.31 | 1.35 | 1.35 | 1.43 | 1.5  | 1.56 | 1.56 | 1.64 | 1.67 | 1.67 | 1.64 | 1.68 | 1.67 | 1.68 | 1.69 | 1.71 | 1.71 | 1.74 | 1.71 | 1.67 | 1.65 | 1.58 | 1.56 | 1.43 | 1.36 | 1.24 | 1.24 | 1.28 | 1.26 | 1.33 | 1.36 | 1.44 | 1.42 | 1.44 | 1.46 | 1.5  | 1.49 | 1.47 | 1.47 | 1.54 | 1.54 | 1.54 | 1.47 | 1.49 | 1.53 | 1.51 | 1.5  | 1.51 | 1.57 | 1.57 |   1.57 |   1.53 |   1.54 |   1.49 |   1.46 |   1.43 |   1.43 |   1.39 |   1.39 |   1.4  |   1.42 |   1.39 |   1.37 |   1.37 |   1.4  |   1.4  |   1.43 |   1.4  |   1.42 |   1.44 |   1.44 |   1.4  |   1.37 |   1.36 |   1.32 | 1.29 | 1.31 | 1.29 | 1.29 | 1.19 | 1.24 | 1.19 | 1.19 | 1.25 | 1.24 | 1.26 | 1.28 | 1.26 | 1.37 |  1.33 |  1.33 |  1.28 |  1.24 |  1.25 |  1.25 |  1.25 |  1.26 |  1.24 |  1.22 |  1.28 |  1.28 |  1.32 |  1.37 |  1.39 |  1.36 |  1.32 |  1.31 |  1.36 |  1.33 |  1.5  |  1.5  |  1.5  |  1.5  |  1.5  |  1.47 |  1.46 |  1.49 |  1.57 |  1.58 |  1.58 |  1.62 |  1.64 |  1.64 |  1.67 |  1.67 |  1.68 |  1.74 |  1.81 |  1.93 |  1.93 |  1.87 |  1.85 |  1.83 |  1.76 |  1.76 |  1.72 |  1.75 |  1.92 |  1.83 |  1.82 |  1.79 |  1.85 |  1.86 |  1.83 |  1.83 |  1.82 |  1.81 |  1.89 |   1.89 |   1.92 |   1.93 |   1.96 |   1.92 |   1.86 |   1.86 |   1.86 |   1.93 |   1.87 |   1.85 |   1.72 |   1.71 |   1.71 |   1.72 |   1.75 |   1.81 |   1.82 |  1.75 |  1.71 |  1.67 |  1.68 |  1.65 |  1.65 |  1.65 |  1.67 |  1.69 |  1.75 |  1.64 |  1.57 |  1.44 |  1.6  |  1.69 |  1.68 |  1.72 |  1.69 |  1.71 |  1.67 |  1.64 |  1.49 |  1.46 |
        +------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+
        | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.03 | 0.03 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.03 | 0.03 | 0.03 | 0.03 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 | 0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.03 |   0.03 |   0.03 |   0.03 |   0.03 |   0.03 | 0.03 | 0.03 | 0.03 | 0.04 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 |  0.03 |  0.03 |  0.01 |  0.01 |  0.01 |  0.01 |  0.03 |  0.03 |  0.03 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.01 |  0.01 |  0.01 | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.04 |
        +------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+
        | 0.15 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.15 | 0.14 | 0.17 | 0.18 | 0.18 | 0.18 | 0.18 | 0.18 | 0.19 | 0.19 | 0.19 | 0.19 | 0.21 | 0.21 | 0.21 | 0.19 | 0.21 | 0.22 | 0.22 | 0.24 | 0.24 | 0.24 | 0.24 | 0.24 | 0.22 | 0.22 | 0.22 | 0.22 | 0.22 | 0.25 | 0.25 | 0.25 | 0.26 | 0.26 | 0.28 | 0.28 | 0.29 | 0.25 | 0.25 | 0.24 | 0.22 | 0.22 | 0.21 | 0.21 | 0.21 | 0.21 | 0.21 | 0.19 | 0.21 | 0.21 | 0.21 | 0.01 | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | nan    | 0.01 | 0.01 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 | 0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.06 |  0.04 |  0.04 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |  0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.04 |   0.01 |   0.01 |   0.01 |   0.01 |   0.01 |   0.01 |   0.01 |   0.01 |   0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.01 |  0.03 |  0.03 |  0.03 |  0.03 |  0.03 |  0.01 |
        +------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+
        | 0.31 | 0.25 | 0.21 | 0.19 | 0.19 | 0.19 | 0.19 | 0.18 | 0.19 | 0.21 | 0.21 | 0.21 | 0.21 | 0.22 | 0.26 | 0.26 | 0.26 | 0.26 | 0.29 | 0.28 | 0.26 | 0.26 | 0.26 | 0.26 | 0.28 | 0.26 | 0.24 | 0.24 | 0.22 | 0.24 | 0.25 | 0.25 | 0.25 | 0.26 | 0.29 | 0.28 | 0.28 | 0.28 | 0.29 | 0.29 | 0.29 | 0.29 | 0.29 | 0.29 | 0.25 | 0.25 | 0.25 | 0.25 | 0.26 | 0.26 | 0.26 | 0.26 | 0.26 | 0.26 | 0.26 | 0.26 | 0.28 | 0.28 | 0.26 | 0.26 | 0.26 |   0.26 |   0.25 |   0.24 |   0.19 |   0.19 |   0.19 |   0.19 |   0.17 |   0.17 |   0.17 |   0.17 |   0.17 |   0.15 |   0.14 |   0.15 |   0.15 |   0.15 |   0.18 |   0.17 |   0.15 |   0.15 |   0.15 |   0.12 |   0.11 |   0.12 | 0.14 | 0.14 | 0.14 | 0.15 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.18 | 0.18 | 0.18 | 0.17 | 0.17 |  0.17 |  0.17 |  0.18 |  0.18 |  0.18 |  0.18 |  0.17 |  0.17 |  0.18 |  0.17 |  0.18 |  0.18 |  0.18 |  0.18 |  0.19 |  0.19 |  0.21 |  0.21 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.22 |  0.21 |  0.21 |  0.22 |  0.21 |  0.21 |  0.21 |  0.21 |  0.21 |  0.21 |  0.21 |  0.19 |  0.18 |  0.18 |  0.17 |  0.15 |  0.15 |  0.15 |  0.15 |  0.15 |  0.15 |  0.14 |  0.14 |  0.14 |  0.14 |  0.14 |  0.17 |  0.18 |  0.17 |  0.17 |  0.17 |  0.17 |  0.17 |  0.17 |  0.15 |   0.15 |   0.14 |   0.14 |   0.14 |   0.14 |   0.12 |   0.12 |   0.11 |   0.11 |   0.1  |   0.1  |   0.1  |   0.1  |   0.1  |   0.1  |   0.12 |   0.12 |   0.12 |  0.12 |  0.11 |  0.11 |  0.12 |  0.12 |  0.12 |  0.12 |  0.12 |  0.12 |  0.12 |  0.12 |  0.12 |  0.14 |  0.12 |  0.14 |  0.15 |  0.15 |  0.15 |  0.15 |  0.17 |  0.17 |  0.17 |  0.17 |
        +------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+------+------+------+------+------+------+------+------+------+------+------+------+------+------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+--------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+-------+
        
        
        You can also run the extraction directly to a file,
        a thing that can get handy when you have to run
        a very big bed file. You just need to specify a target file.
        
        .. code:: python
        
            from pybwtool import extract
        
            extract(
                bed_path="path/to/my/bed_file.bed",
                bigwig_path="path/to/my/bigwig_file.bigwig",
                target="target.bed"
            )
        
        Common fixes for getting bwtool to work
        ----------------------------------------------
        Consider looking at the Travis-CI configuration.
        If it works there, it should also work for you.
        
        - `For when the installation of bwtool gets stuck <https://github.com/CRG-Barcelona/bwtool/issues/65>`_
        - `For when the installation of libbeato (a required library) gets stuck <https://github.com/CRG-Barcelona/libbeato/issues/6>`_
        
        
        
        .. |travis| image:: https://travis-ci.org/LucaCappelletti94/pybwtool.png
           :target: https://travis-ci.org/LucaCappelletti94/pybwtool
           :alt: Travis CI build
        
        .. |sonar_quality| image:: https://sonarcloud.io/api/project_badges/measure?project=LucaCappelletti94_pybwtool&metric=alert_status
            :target: https://sonarcloud.io/dashboard/index/LucaCappelletti94_pybwtool
            :alt: SonarCloud Quality
        
        .. |sonar_maintainability| image:: https://sonarcloud.io/api/project_badges/measure?project=LucaCappelletti94_pybwtool&metric=sqale_rating
            :target: https://sonarcloud.io/dashboard/index/LucaCappelletti94_pybwtool
            :alt: SonarCloud Maintainability
        
        .. |sonar_coverage| image:: https://sonarcloud.io/api/project_badges/measure?project=LucaCappelletti94_pybwtool&metric=coverage
            :target: https://sonarcloud.io/dashboard/index/LucaCappelletti94_pybwtool
            :alt: SonarCloud Coverage
        
        .. |coveralls| image:: https://coveralls.io/repos/github/LucaCappelletti94/pybwtool/badge.svg?branch=master
            :target: https://coveralls.io/github/LucaCappelletti94/pybwtool?branch=master
            :alt: Coveralls Coverage
        
        .. |pip| image:: https://badge.fury.io/py/pybwtool.svg
            :target: https://badge.fury.io/py/pybwtool
            :alt: Pypi project
        
        .. |downloads| image:: https://pepy.tech/badge/pybwtool
            :target: https://pepy.tech/badge/pybwtool
            :alt: Pypi total project downloads 
        
        .. |codacy| image:: https://api.codacy.com/project/badge/Grade/6f79fce7cb144f509ed584af3f950ab8
            :target: https://www.codacy.com/manual/LucaCappelletti94/pybwtool?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=LucaCappelletti94/pybwtool&amp;utm_campaign=Badge_Grade
            :alt: Codacy Maintainability
        
        .. |code_climate_maintainability| image:: https://api.codeclimate.com/v1/badges/68b5e35660142727406a/maintainability
            :target: https://codeclimate.com/github/LucaCappelletti94/pybwtool/maintainability
            :alt: Maintainability
        
        .. |code_climate_coverage| image:: https://api.codeclimate.com/v1/badges/68b5e35660142727406a/test_coverage
            :target: https://codeclimate.com/github/LucaCappelletti94/pybwtool/test_coverage
            :alt: Code Climate Coverate
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Provides-Extra: test
