README.md
setup.py
bin/dRep
drep/VERSION
drep/WorkDirectory.py
drep/__init__.py
drep/argumentParser.py
drep/controller.py
drep/d_adjust.py
drep/d_analyze.py
drep/d_bonus.py
drep/d_choose.py
drep/d_evaluate.py
drep/d_filter.py
drep/d_workflows.py
drep.egg-info/PKG-INFO
drep.egg-info/SOURCES.txt
drep.egg-info/dependency_links.txt
drep.egg-info/not-zip-safe
drep.egg-info/requires.txt
drep.egg-info/top_level.txt
drep/d_cluster/__init__.py
drep/d_cluster/cluster_utils.py
drep/d_cluster/compare_utils.py
drep/d_cluster/controller.py
drep/d_cluster/external.py
drep/d_cluster/greedy_clustering.py
drep/d_cluster/parsers.py
drep/d_cluster/utils.py
helper_scripts/ScaffoldLevel_dRep.py
helper_scripts/parse_stb.py