MANIFEST.in
README.md
pyproject.toml
setup.py
cellforest/__init__.py
cellforest.egg-info/PKG-INFO
cellforest.egg-info/SOURCES.txt
cellforest.egg-info/dependency_links.txt
cellforest.egg-info/requires.txt
cellforest.egg-info/top_level.txt
cellforest/config/__init__.py
cellforest/config/default_config.yaml
cellforest/hooks/__init__.py
cellforest/hooks/hooks/__init__.py
cellforest/hooks/hooks/matrix_node/__init__.py
cellforest/hooks/hooks/matrix_node/hooks.py
cellforest/hooks/hooks/metadata/__init__.py
cellforest/hooks/hooks/metadata/hooks.py
cellforest/hooks/hooks/unversioned/__init__.py
cellforest/hooks/hooks/unversioned/hooks.py
cellforest/plot/__init__.py
cellforest/plot/root_qc.py
cellforest/processes/__init__.py
cellforest/processes/processes/__init__.py
cellforest/processes/processes/cluster/__init__.py
cellforest/processes/processes/cluster/process.py
cellforest/processes/processes/expression/__init__.py
cellforest/processes/processes/expression/process.py
cellforest/processes/processes/gsea/__init__.py
cellforest/processes/processes/gsea/process.py
cellforest/processes/processes/normalize/__init__.py
cellforest/processes/processes/normalize/process.py
cellforest/processes/processes/reduce/__init__.py
cellforest/processes/processes/reduce/process.py
cellforest/processes/processes/reduce/umap.py
cellforest/processes/processes/test_process/__init__.py
cellforest/processes/processes/test_process/process.py
cellforest/processes/scripts/__init__.py
cellforest/structures/__init__.py
cellforest/structures/exceptions.py
cellforest/structures/counts/Counts.py
cellforest/structures/counts/CountsStore.py
cellforest/structures/counts/__init__.py
cellforest/structures/counts/build_counts_store.py
cellforest/structures/counts/const.py
cellforest/templates/BatchMethodsSC.py
cellforest/templates/CellBase.py
cellforest/templates/CellBranch.py
cellforest/templates/CellInterface.py
cellforest/templates/CellTree.py
cellforest/templates/ReaderMethodsSC.py
cellforest/templates/WriterMethodsSC.py
cellforest/templates/__init__.py
cellforest/templates/preprocessing.py
cellforest/utils/__init__.py
cellforest/utils/cellranger/CellRangerIO.py
cellforest/utils/cellranger/DataMerge.py
cellforest/utils/cellranger/__init__.py
cellforest/utils/cellranger/const.py
cellforest/utils/filesystem/__init__.py
cellforest/utils/filesystem/filesystem.py
cellforest/utils/r/Convert.py
cellforest/utils/r/__init__.py
cellforest/utils/r/old_rds_to_pickle.py
cellforest/utils/r/run_r_script.py
cellforest/utils/shell/__init__.py
cellforest/utils/shell/shell_command.py
tests/hooks/__init__.py
tests/hooks/example_hooks/__init__.py
tests/hooks/example_hooks/hooks.py
tests/utils/__init__.py
tests/utils/get_test_data.py
tests/utils/get_test_spec.py