Metadata-Version: 2.1
Name: ALLCools
Version: 1.0.5
Summary: Toolkit for single-cell DNA methylome and multiomic data analysis.
Author: Hanqing Liu
Maintainer-email: Hanqing Liu <hanliu@salk.edu>, Jingtian Zhou <jzhou@salk.edu>, Wei Tian <wtian@salk.edu>
Requires-Python: >=3.7
Description-Content-Type: text/markdown
Requires-Dist: anndata
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: natsort
Requires-Dist: pandas
Requires-Dist: pybedtools
Requires-Dist: pyBigWig
Requires-Dist: pysam
Requires-Dist: seaborn
Requires-Dist: xarray
Requires-Dist: pyyaml
Requires-Dist: biopython ; extra == "analysis"
Requires-Dist: dask ; extra == "analysis"
Requires-Dist: numba ; extra == "analysis"
Requires-Dist: imblearn ; extra == "analysis"
Requires-Dist: leidenalg ; extra == "analysis"
Requires-Dist: networkx ; extra == "analysis"
Requires-Dist: opentsne ; extra == "analysis"
Requires-Dist: plotly ; extra == "analysis"
Requires-Dist: pynndescent ; extra == "analysis"
Requires-Dist: scanpy ; extra == "analysis"
Requires-Dist: scikit-learn ; extra == "analysis"
Requires-Dist: statsmodels ; extra == "analysis"
Requires-Dist: rpy2 ; extra == "analysis"
Requires-Dist: tpot ; extra == "analysis"
Requires-Dist: cooler ; extra == "analysis"
Requires-Dist: bump2version ; extra == "dev"
Requires-Dist: pre-commit ; extra == "dev"
Requires-Dist: jupyter-book ; extra == "doc"
Requires-Dist: ghp-import ; extra == "doc"
Requires-Dist: pytest ; extra == "test"
Requires-Dist: pytest-cov ; extra == "test"
Project-URL: Documentation, https://lhqing.github.io/ALLCools/intro.html
Project-URL: Home-page, https://github.com/lhqing/ALLCools
Project-URL: Source, https://github.com/lhqing/ALLCools
Provides-Extra: analysis
Provides-Extra: dev
Provides-Extra: doc
Provides-Extra: test

# ALLCools

[![Tests](https://img.shields.io/github/workflow/status/lhqing/allcools/Test/main)](https://github.com/lhqing/allcools/actions/workflows/test.yml)
[![Jupyter Book Badge](https://jupyterbook.org/badge.svg)](https://lhqing.github.io/ALLCools/intro.html)

Please see [documentation](https://lhqing.github.io/ALLCools/intro.html).

