Metadata-Version: 2.1
Name: pytometry
Version: 0.1.1
Summary: Pytometry is a Python package for flow and mass cytometry analysis.
Author-email: Maren Buettner <maren.buettner@helmholtz-muenchen.de>
Description-Content-Type: text/markdown
Requires-Dist: nbproject
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: anndata
Requires-Dist: scanpy
Requires-Dist: scipy
Requires-Dist: seaborn
Requires-Dist: matplotlib
Requires-Dist: readfcs
Requires-Dist: pre-commit ; extra == "dev"
Requires-Dist: nox ; extra == "dev"
Requires-Dist: pytest>=6.0 ; extra == "test"
Requires-Dist: pytest-cov ; extra == "test"
Project-URL: Home, https://github.com/buettnerlab/pytometry
Provides-Extra: dev
Provides-Extra: test

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# Pytometry: Flow & mass cytometry analytics

This package is in private beta at this moment!

This package extends scanpy to for efficient and scalable handling of flow and mass cytometry data analysis. It provides

- the functionality to read in flow data in the fcs file format as anndata objects
- flow and mass cytometry specific preprocessing tools
- access to the entire scanpy workflow functionality

Follow https://twitter.com/mbuttner to learn about a first public release.

For beta users: Read the [docs](https://pytometry.netlify.app).

