MANIFEST.in
README.md
build_applesdtb.py
run_apples.py
setup.py
apples/Algorithm.py
apples/BE.py
apples/BME.py
apples/FM.py
apples/OLS.py
apples/OptionsBasic.py
apples/OptionsBuild.py
apples/OptionsRun.py
apples/PoolQueryWorker.py
apples/PoolRepresentativeWorker.py
apples/PrioritySet.py
apples/Reference.py
apples/Subtree.py
apples/__init__.py
apples/distance.py
apples/fasta2dic.py
apples/jutil.py
apples/prepareTree.py
apples/reestimateBackbone.py
apples/util.py
apples.egg-info/PKG-INFO
apples.egg-info/SOURCES.txt
apples.egg-info/dependency_links.txt
apples.egg-info/not-zip-safe
apples.egg-info/requires.txt
apples.egg-info/top_level.txt
apples/tools/FastTree-darwin
apples/tools/FastTree-linux
apples/tools/FastTree.exe
apples/tools/__init__.py