Metadata-Version: 2.1
Name: TriGeneI
Version: 0.1
Summary: TGMI network inference using Python
Home-page: https://github.com/Hua-CM/TGMI
Author: Zhongyi Hua
Author-email: njbxhzy@hotmail.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Operating System :: OS Independent
Requires-Python: >=3
Description-Content-Type: text/markdown
License-File: LICENSE

# TGMI
Rewrite TGMI network inference using Python

## example
Download and enter into the TGMI directory
~~~shell
cd TGMI
python TGMI.py -i  example/expression.txt -t example/tfs.txt -g example/genes.txt -o tgmi.txt
~~~
input file format see [example](./example)  

There will be three outputs:
1. tgmi_network.txt  
2. tgmi_TF.txt
3. tgmi_Gene.txt

## Reference
Chathura Gunasekara, Kui Zhang, Wenping Deng, Laura Brown, Hairong Wei, TGMI: an efficient algorithm for identifying pathway regulators through evaluation of triple-gene mutual interaction, Nucleic Acids Research, Volume 46, Issue 11, 20 June 2018, Page e67, https://doi.org/10.1093/nar/gky210
 


