README.md
setup.cfg
setup.py
bin/base-frequencies.py
bin/connected-components.py
bin/consistency-basic.py
bin/consistency-heatmap.py
bin/coverage-and-significant-locations.py
bin/create-mid-experiment-data.py
bin/create-reads.py
bin/multiple-significant-base-frequencies.py
bin/mutate-reads.py
bin/random-nt-sequence.py
bin/significant-base-frequencies.py
bin/simulation-significant-base-frequencies.sh
midtools/__init__.py
midtools/analysis.py
midtools/clusterAnalysis.py
midtools/clusters.py
midtools/connectedComponentAnalysis.py
midtools/distances.py
midtools/entropy.py
midtools/greadyAnalysis.py
midtools/match.py
midtools/mutate.py
midtools/nid.py
midtools/offsets.py
midtools/options.py
midtools/plotting.py
midtools/pqueue.py
midtools/read.py
midtools/reference.py
midtools/utils.py
midtools.egg-info/PKG-INFO
midtools.egg-info/SOURCES.txt
midtools.egg-info/dependency_links.txt
midtools.egg-info/requires.txt
midtools.egg-info/top_level.txt
test/test_alignedRead.py
test/test_clusters.py
test/test_distances.py
test/test_mutate.py
test/test_offsets.py
test/test_pqueue.py