LICENSE
MANIFEST.in
README.md
setup.py
upload_instructions.md
.ipynb_checkpoints/MANIFEST-checkpoint.in
.ipynb_checkpoints/README-checkpoint.md
.ipynb_checkpoints/setup-checkpoint.py
.ipynb_checkpoints/upload_instructions-checkpoint.md
hapsburg/__init__.py
hapsburg/cfunc.c
hapsburg/cfunc.cpython-36m-x86_64-linux-gnu.so
hapsburg/cfunc.cpython-37m-x86_64-linux-gnu.so
hapsburg/cfunc.html
hapsburg/cfunc.pyx
hapsburg/emissions.py
hapsburg/func.py
hapsburg/hmm_inference.py
hapsburg/postprocessing.py
hapsburg/preprocessing.py
hapsburg/simData.py
hapsburg/transitions.py
hapsburg.egg-info/PKG-INFO
hapsburg.egg-info/SOURCES.txt
hapsburg.egg-info/dependency_links.txt
hapsburg.egg-info/top_level.txt
hapsburg/.ipynb_checkpoints/__init__-checkpoint.py
hapsburg/.ipynb_checkpoints/emissions-checkpoint.py
hapsburg/.ipynb_checkpoints/hmm_inference-checkpoint.py
hapsburg/.ipynb_checkpoints/postprocessing-checkpoint.py
hapsburg/.ipynb_checkpoints/preprocessing-checkpoint.py
hapsburg/.ipynb_checkpoints/transitions-checkpoint.py
hapsburg/PackagesSupport/__init__.py
hapsburg/PackagesSupport/hapsburg_run.py
hapsburg/PackagesSupport/pp_individual_roh_csvs.py
hapsburg/PackagesSupport/roh_expectations.py
hapsburg/PackagesSupport/sqrt_scale.py
hapsburg/PackagesSupport/.ipynb_checkpoints/hapsburg_run-checkpoint.py
hapsburg/PackagesSupport/.ipynb_checkpoints/pp_individual_roh_csvs-checkpoint.py
hapsburg/PackagesSupport/.ipynb_checkpoints/roh_expectations-checkpoint.py
hapsburg/PackagesSupport/.ipynb_checkpoints/sqrt_scale-checkpoint.py
hapsburg/PackagesSupport/__pycache__/__init__.cpython-36.pyc
hapsburg/PackagesSupport/__pycache__/__init__.cpython-37.pyc
hapsburg/PackagesSupport/__pycache__/hapsburg_run.cpython-37.pyc
hapsburg/PackagesSupport/__pycache__/pp_individual_roh_csvs.cpython-36.pyc
hapsburg/PackagesSupport/__pycache__/pp_individual_roh_csvs.cpython-37.pyc
hapsburg/PackagesSupport/__pycache__/roh_expectations.cpython-36.pyc
hapsburg/PackagesSupport/__pycache__/roh_expectations.cpython-37.pyc
hapsburg/PackagesSupport/__pycache__/sqrt_scale.cpython-36.pyc
hapsburg/PackagesSupport/__pycache__/sqrt_scale.cpython-37.pyc
hapsburg/PackagesSupport/h5_python/__init__.py
hapsburg/PackagesSupport/h5_python/h5_functions.py
hapsburg/PackagesSupport/h5_python/__pycache__/h5_functions.cpython-36.pyc
hapsburg/PackagesSupport/h5_python/__pycache__/h5_functions.cpython-37.pyc
hapsburg/PackagesSupport/loadEigenstrat/__init__.py
hapsburg/PackagesSupport/loadEigenstrat/loadEigenstrat.py
hapsburg/PackagesSupport/loadEigenstrat/.ipynb_checkpoints/loadEigenstrat-checkpoint.py
hapsburg/PackagesSupport/loadEigenstrat/__pycache__/__init__.cpython-37.pyc
hapsburg/PackagesSupport/loadEigenstrat/__pycache__/loadEigenstrat.cpython-36.pyc
hapsburg/PackagesSupport/loadEigenstrat/__pycache__/loadEigenstrat.cpython-37.pyc
hapsburg/PackagesSupport/parallel_runs/__init__.py
hapsburg/PackagesSupport/parallel_runs/helper_functions.py
hapsburg/PackagesSupport/parallel_runs/.ipynb_checkpoints/helper_functions-checkpoint.py
hapsburg/PackagesSupport/parallel_runs/__pycache__/__init__.cpython-37.pyc
hapsburg/PackagesSupport/parallel_runs/__pycache__/helper_functions.cpython-36.pyc
hapsburg/PackagesSupport/parallel_runs/__pycache__/helper_functions.cpython-37.pyc
hapsburg/__pycache__/__init__.cpython-36.pyc
hapsburg/__pycache__/__init__.cpython-37.pyc
hapsburg/__pycache__/c_func.cpython-36.pyc
hapsburg/__pycache__/cfunc.cpython-36.pyc
hapsburg/__pycache__/emissions.cpython-36.pyc
hapsburg/__pycache__/emissions.cpython-37.pyc
hapsburg/__pycache__/func.cpython-36.pyc
hapsburg/__pycache__/func.cpython-37.pyc
hapsburg/__pycache__/hmm_inference.cpython-36.pyc
hapsburg/__pycache__/hmm_inference.cpython-37.pyc
hapsburg/__pycache__/postprocessing.cpython-36.pyc
hapsburg/__pycache__/postprocessing.cpython-37.pyc
hapsburg/__pycache__/preprocessing.cpython-36.pyc
hapsburg/__pycache__/preprocessing.cpython-37.pyc
hapsburg/__pycache__/transitions.cpython-36.pyc
hapsburg/__pycache__/transitions.cpython-37.pyc
hapsburg/figures/__init__.py
hapsburg/figures/plot_bars.py
hapsburg/figures/plot_individual_roh.py
hapsburg/figures/plot_posterior.py
hapsburg/figures/plot_timelines.py
hapsburg/figures/.ipynb_checkpoints/__init__-checkpoint.py
hapsburg/figures/.ipynb_checkpoints/plot_bars-checkpoint.py
hapsburg/figures/.ipynb_checkpoints/plot_individual_roh-checkpoint.py
hapsburg/figures/.ipynb_checkpoints/plot_posterior-checkpoint.py
hapsburg/figures/.ipynb_checkpoints/plot_timelines-checkpoint.py
hapsburg/figures/__pycache__/__init__.cpython-36.pyc
hapsburg/figures/__pycache__/__init__.cpython-37.pyc
hapsburg/figures/__pycache__/plot_bars.cpython-36.pyc
hapsburg/figures/__pycache__/plot_bars.cpython-37.pyc
hapsburg/figures/__pycache__/plot_individual_roh.cpython-37.pyc
hapsburg/figures/__pycache__/plot_posterior.cpython-37.pyc
hapsburg/figures/__pycache__/plot_timelines.cpython-37.pyc