
        [console_scripts]
        add_matesequence=readtagger.cli.add_matesequence:annotate_mate
        allow_dovetailing=readtagger.cli.allow_dovetailing:allow_dovetailing
        annotate_softclipped_reads=readtagger.cli.annotate_softclipped_reads:annotate_softclipped_reads
        confirm_insertions=readtagger.cli.classify_somatic_insertions:confirm_insertions
        findcluster=readtagger.cli.findcluster:findcluster
        merge_clusterfinder_vcfs=readtagger.cli.merge_findcluster_vcf:merge_findcluster
        plot_coverage=readtagger.cli.plot_coverage:plot_coverage
        pysamtools_view=readtagger.cli.pysamtools_view_cli:pysamtools_view
        readtagger=readtagger.cli.readtagger_cli:readtagger
        update_mapq=readtagger.cli.update_mapq:update_mapq
        write_supplementary_fastq=readtagger.cli.write_supplementary_fastq:write_supplementary_fastq
        extract_variants=readtagger.cli.extract_variants:extract_variants
        normalize_readsizes=readtagger.cli.normalize_readsizes:normalize_readsizes
        summarize_fragments=readtagger.cli.summarize_fragments:cli
